Tsar001385.1
Basic Information
- Insect
- Trichomalopsis sarcophagae
- Gene Symbol
- RHOBTB1
- Assembly
- GCA_002249905.1
- Location
- NNAY01000872.1:21179-41191[-]
Transcription Factor Domain
- TF Family
- BTB
- Domain
- zf-C2H2|ZBTB
- PFAM
- PF00651
- TF Group
- Zinc-Coordinating Group
- Description
- The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.7e-10 6.1e-08 32.6 0.1 8 44 261 296 254 315 0.82 2 3 0.0019 0.25 11.3 0.1 48 103 392 454 381 461 0.76 3 3 5.5e-19 7.2e-17 61.3 0.0 5 108 484 586 481 588 0.93
Sequence Information
- Coding Sequence
- ATGGACAATGAGCAGCCCCACCAAGAGCTGGTCAAGTGCGTGGTCGTGGGCGACACGGCGGTCGGGAAGACCCGGCTGATCTGCGCCCGAGCCTGCAACAAGCACGTTTCCCTGTCGCAACTGCTCACCACACACGTACCCACTGTTTGGGCCATTGATCAGTACAGGATCTACAAAGACGTGTTGGAGCGCTCCTGGGAGGTTGTCGACAATGTGAACGTCTCGTTGCGACTATGGGACACCTTCGGCGATCACGAGAAAGATCGGAGATTCGCCTACGGCAGATCAGACGTTGTGCTACTATGCTTTTCCATAACGAACCCCGTGTCGCTAAGAAACTGCAAGGCGATGTGGTATCCGGAGATCCGTCGCTTTTGCCCCCACACTCCGGTACTGCTGGTAGGTTGCAAGAACGACCTGCGGTACATGTACCGCGACGAGACCTACCTCAGCTACTTTCGCGATCGAAGCCCCTTCGTCAGGGCGACGCGAAAGAGCGACCTGGTGATGCCGGACCAGGCGCGAGCGGTAGCCCGAGAACTCGGCGTCTGCTACTACGAGACCAGCGTGTTCACCTACTACGGTGTCAACGAGGTCTTCGAGAACTCCATAAGGGCAGCCCTGATCGCTCGACGCCAGCAGAGGTTCTGGATGACCAATCTGAAAAGGGTTAAGAGACCCCTCCTGCAGGCGCCGTTCTGTCCGCCGAAGCCGATACCGCCGGAAGTCTGCCTGGCTCCGAGCACCTACGAGGAGAACATCAAGTCCCTGTGGACAAGGCTGGACCACACCGACGTCACTCTCATCGCCGGCAATCACTCTTTCACCGCCCATCGATGCTTCCTTGCCGCTGCCTCGCCCGCCTTTCACAGGCTCTTCACTATGGAACTCGTTCAGGAGTACACGCCCAGGAGCTCCAGCGAGTCCAGCATGGTCAGTTCGTTCGGCGAGGCGACAGTCGGCGACTTTAATGACGACACGGAGTGCCTGATTCGCATCGATCAGAATAAAACCAACAAGGTTTGGGATCAGATCAAGAGACGCTCGAGTTTTCAAGTACTGCCCACTCAAGAAACGCAGAGAAAGCCCATCGGAGCCACGAGGGAACTCAATCATCCTGCCTTCCAGTGCATACGCGTCGCTGTGGTTGAAAACAGCAACGGCGTTCACCAACAAACGACCGTCGTCACACTGTCAAAGCTCATCACGAGCCAAGCGATGCAGCAATGCCTGCAGTTCATTTACACGGGAAATCTGGACAAACGCTACCACGATCTGAAAACAGCTCCTATCGGGCTACTACTGGAGATCAGACAGGCTGCCGAGTTTCTGGAACTGCCGCAACTGCTGATGGTCCTCAACAACATGCAGTCGCGGGAGCAGTACATGAACAGCGACCTGAACAACCAGTTTAAGCAGATTGTGAGACAGAGGCTGGAGACACTTTGTCTGGAGCAAGGTCTTTTTGCTGACGTTGTGTTCGACCTGGACGACGGAAGCTTGTCAGCGCACAGGGCCATTCTAACCGCGCGTTGCGACATGATGAAGGCCATGTTCTCCGGTGACTTCCGCGAGAGTAGTGCCAAAATTATCGTCTTTCCAGGTGTGCGCGAGTACACGTTCCACAAGCTCCTCTGCTACCTGTACACTGACGAGGTACCAGCGATATCCTCTGCGAGGTGTCTGAACCTTTTGGAATTGGCCAATCGGCTCTGTCTACCACGTCTGGTGAACCTCGTGGAGAACCGCGTGATCGAAGACCTGGAGAGGCTATCGCAAAACGACGGCAACGAGGCCGTGGAAAACTGTCTTCGACTGCTGGAACCGTGCAAGCTTCACAACGCGGACCAGCTGGCTGACTGGTGCATGAACCACTTGTGCGTCAATTATAACAAACTCTGCAAGATGTCGCCACGTAGTCTGCGACTTCTGCACCCGGAGAACCAGGAATATCTCAGCGAACATCGCTGGCCTCCAGTTTGGTATCTCAAGGACTACGACTACTACCAGAAGTGTTTGGCTGAGCAGGACCGCGAGAGCAAGCCCACCTTGAAGCGCAACCGCAACCAGTCGTCCAGCGGTTCAACCTCCAACTCTTCATCCTCTGGCGGATGTCTCTGCTTCTCGAGCTCCAACAAGTCTCGGCGCTCGACCTCGGGTGTGCTAACTacctcgacgacgacaacgacgaccgTCGGCGAGGCCACACCCGAGCGGCCCCTGTTCGAGTCGGCCGTCATCNNNNNNNNNNNNNNNNNNNNNNCGCTGCTGCCGGCGAAGCCGTATGACAGGGGCCGAGCGGCCTGCGCCGCTCCGTCAGATTCGTCCTCGTCCTGCCCGTGCTCCTCGTCTTTATCGGCACGATTTTTACCATTTTGA
- Protein Sequence
- MDNEQPHQELVKCVVVGDTAVGKTRLICARACNKHVSLSQLLTTHVPTVWAIDQYRIYKDVLERSWEVVDNVNVSLRLWDTFGDHEKDRRFAYGRSDVVLLCFSITNPVSLRNCKAMWYPEIRRFCPHTPVLLVGCKNDLRYMYRDETYLSYFRDRSPFVRATRKSDLVMPDQARAVARELGVCYYETSVFTYYGVNEVFENSIRAALIARRQQRFWMTNLKRVKRPLLQAPFCPPKPIPPEVCLAPSTYEENIKSLWTRLDHTDVTLIAGNHSFTAHRCFLAAASPAFHRLFTMELVQEYTPRSSSESSMVSSFGEATVGDFNDDTECLIRIDQNKTNKVWDQIKRRSSFQVLPTQETQRKPIGATRELNHPAFQCIRVAVVENSNGVHQQTTVVTLSKLITSQAMQQCLQFIYTGNLDKRYHDLKTAPIGLLLEIRQAAEFLELPQLLMVLNNMQSREQYMNSDLNNQFKQIVRQRLETLCLEQGLFADVVFDLDDGSLSAHRAILTARCDMMKAMFSGDFRESSAKIIVFPGVREYTFHKLLCYLYTDEVPAISSARCLNLLELANRLCLPRLVNLVENRVIEDLERLSQNDGNEAVENCLRLLEPCKLHNADQLADWCMNHLCVNYNKLCKMSPRSLRLLHPENQEYLSEHRWPPVWYLKDYDYYQKCLAEQDRESKPTLKRNRNQSSSGSTSNSSSSGGCLCFSSSNKSRRSTSGVLTTSTTTTTTVGEATPERPLFESAVIXXXXXXXXLLPAKPYDRGRAACAAPSDSSSSCPCSSSLSARFLPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01381410; iTF_00398179; iTF_00668707; iTF_01469763; iTF_01036293; iTF_01468933; iTF_01380679; iTF_01037098; iTF_00714476; iTF_00739148; iTF_00309581; iTF_01466317; iTF_01524111; iTF_00713712; iTF_01274576; iTF_00304529; iTF_00326449; iTF_01035505; iTF_01057745; iTF_01465394; iTF_00646067; iTF_00841172; iTF_00080182; iTF_00397398; iTF_00734681; iTF_01056987; iTF_01190459; iTF_00073820; iTF_00286429; iTF_01468061; iTF_00287328; iTF_00464064; iTF_00877984; iTF_00880577; iTF_00305698; iTF_00378884; iTF_00378103; iTF_00379709; iTF_00381950; iTF_01003620; iTF_01001474; iTF_01002178; iTF_00997123; iTF_00317543; iTF_01006218; iTF_01004363; iTF_00046254; iTF_00048049; iTF_01000657; iTF_00316883; iTF_00047093; iTF_00996440; iTF_01560537; iTF_01005242; iTF_01389542; iTF_01393634; iTF_01392870; iTF_00011244; iTF_00460908; iTF_00064558; iTF_01390417; iTF_00200882; iTF_00676851; iTF_01392117; iTF_00980248; iTF_01391292; iTF_00143946; iTF_01394443; iTF_00368877; iTF_00305102; iTF_00883150; iTF_00882255; iTF_00968913; iTF_00969713; iTF_01488787; iTF_01492980; iTF_01493681; iTF_00368183; iTF_00879834; iTF_00718718; iTF_01380058;
- 90% Identity
- iTF_01381410; iTF_01036293; iTF_01380679; iTF_01037098; iTF_00739148; iTF_00309581; iTF_01274576; iTF_01035505; iTF_01190459; iTF_00286429; iTF_00287328; iTF_01469763; iTF_01468933; iTF_01466317; iTF_01465394; iTF_01468061; iTF_00143946; iTF_01110219; iTF_01113516; iTF_01112717; iTF_01111058; iTF_01111863; iTF_00714476; iTF_00713712; iTF_00326449; iTF_00734681; iTF_00693009; iTF_00690287; iTF_00691184; iTF_00080182; iTF_00969713; iTF_00968913; iTF_00646067; iTF_00073820; iTF_00877984; iTF_00464064;
- 80% Identity
- -