Tsar000069.1
Basic Information
- Insect
- Trichomalopsis sarcophagae
- Gene Symbol
- rdx_3
- Assembly
- GCA_002249905.1
- Location
- NNAY01005274.1:1018-4598[+]
Transcription Factor Domain
- TF Family
- BTB
- Domain
- zf-C2H2|ZBTB
- PFAM
- PF00651
- TF Group
- Zinc-Coordinating Group
- Description
- The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.3e-24 3e-22 78.7 0.7 1 108 168 273 168 275 0.92 2 4 0.37 49 3.9 0.1 81 108 278 305 270 307 0.87 3 4 3.2e-21 4.2e-19 68.5 0.3 6 108 515 616 510 618 0.90 4 4 3.9 5e+02 0.7 0.0 79 106 619 646 615 649 0.85
Sequence Information
- Coding Sequence
- ATGGCTCCCAAGACGAAATCTAAGATTCTTGGGCAAGTAAAAACTCTCACATCAAAAATCAAGTGGCATATccataaatttaaaacgagTTGCAGTCAAGCGAACGTTGGGGACGCTTTAAAATCGCCGTTGTTTACAACTTcagttgaaaaaagaaatgttcaATGGTATCTGATGTTATACCCTAGAGGAAGAACACAAGATAATAGAGATTTTTTGTCCATCTATTTGTACAGCACCATGTACAAAGGGCAATTTGAAGTAACTGCTACCTTGAACATTTTAAACAACAGAACTCAAGTGGTGGTTGATTGTTATTTGGAGGGATCTGAACTTGGTGAGGCTGTTTGGGGGAATCATAAATTGATATCAACAGAATTCATTACCGATCCACAAAATTCCATGTTAAATGACGGTGATTTAGTAATAATCTGTGAATTGCTAATACTGCCTCAATATGAAGTAGCTACTTTTTTATCTCGAATTCAAGTGCTTGAAATGTTTGAGAATCTTCTAAACGACAGTAAATTTAGCGATGTATCACTTGTTTTAGAAGGTAAAACCATTCGAGCGCACAAGTGCATACTTGCCAAAAACAGCTCAGTATTTGCTGCAATGTTTGATGCTGAGTCGAATGAAAGAAAGGAGATCGTCTTAGAAATTCATGATAGTACTTACAGCATTCTCATGGAAATGATTCGCTTTATCTACACTGGAAAGGTAAATGGAATAGAAAATATGATTGAGGATCTGGCAATTGCAGCCAACAAATATGCACTACACAGATTGATGATTATCTGCGAACAAACAATGATAAAATGTTTGAGCATACATAATGTTATACATTCCCTTCTATTTGCCGACAAACTCGAAATGAAGGAGCTGAAGGCAATGGCTATTGAGTTTATTATTGCGAGTGGCAGTAATGCTATTGATCAAGAAAACTTTAGAACTCTACCTATGGATGTTGTTTTAGAAGTATGTAGCGCTGCGAAAACAACAACATGCGGAACGGTAAAAACTATGGATGCAAAATTTGAGTGGCAAATCCCAGATTTTTACACGCTTTGCAGTCAATCGAAAGTCGGGGACGTTATTAAATCACCAAATTTTGCAACTACAGTAGGCTTCAGGGACGTTGAGTGGTATTTACGGTTGTTTCCTGGAGGAGAAAGACAAGAGTTACAAGATTTCATAGCGCTGTATCTATGTAACACCAAGACCGTGTCTATGGGAAAAATAGTAGCTAAATCCAACTTCATGATTAGGAATAGCGAAGCTCAAGTGGTGGTTAATCATTCTATGACAGAATCCGTTTTTGATTCTAAGACTTCTTGGGGGATTGATCAAGTGATACCAAAAAATTTCATACTCGATCCAGCAAATCAGCTGCTGACCAATGGTAGCTTGACGATAATTTGCGAGATTATACCAATGCCTCGATATCTCGTGAAGGAGTTGAAACAGAACAAAGAGGTACACGAGCAACAACCTACTTTAGCATCTCGACTTGAGCTGCTGGACATTTACGGAAGTCTTATAGACGACAACATATTTAGCGATGTAGCGCTTATTTCAGAAAGTAGAAGTGTTAGAGCGCACAAGTGCATACTTGCCAGGAGCAGCTCAGTATTTGCTACAATGATcgataatgaaataaataaggGGAAGAAGGAGATCATCTTAGAAGTTAATGATATAAGGTATAAAGCTCTGTTGGAAATGATTCGCTTTATATACACTGGAAAGGTAAACGGAATAGAAACAATGATTGAGGATCTCGCAATTGCAGCAAAAAAATTTGCCCTACATACGCTGCTTATTATTTGTGAGCaagtaatgataaaaattatgagCATTCACAATGTCGTAAGTTTCCTTCTAGTTGCCGACAAAGTCAAAATGAAGGAGCTGAAGGCAATGGCAATTGAGTTTGTTACTATGAGCGGCAGTAATGTCATTGATCAGCCAAGCTTTAAAACATTACcttctaaaattatattcaaaatctGTAGCAATTTagcaaacaaatataaatag
- Protein Sequence
- MAPKTKSKILGQVKTLTSKIKWHIHKFKTSCSQANVGDALKSPLFTTSVEKRNVQWYLMLYPRGRTQDNRDFLSIYLYSTMYKGQFEVTATLNILNNRTQVVVDCYLEGSELGEAVWGNHKLISTEFITDPQNSMLNDGDLVIICELLILPQYEVATFLSRIQVLEMFENLLNDSKFSDVSLVLEGKTIRAHKCILAKNSSVFAAMFDAESNERKEIVLEIHDSTYSILMEMIRFIYTGKVNGIENMIEDLAIAANKYALHRLMIICEQTMIKCLSIHNVIHSLLFADKLEMKELKAMAIEFIIASGSNAIDQENFRTLPMDVVLEVCSAAKTTTCGTVKTMDAKFEWQIPDFYTLCSQSKVGDVIKSPNFATTVGFRDVEWYLRLFPGGERQELQDFIALYLCNTKTVSMGKIVAKSNFMIRNSEAQVVVNHSMTESVFDSKTSWGIDQVIPKNFILDPANQLLTNGSLTIICEIIPMPRYLVKELKQNKEVHEQQPTLASRLELLDIYGSLIDDNIFSDVALISESRSVRAHKCILARSSSVFATMIDNEINKGKKEIILEVNDIRYKALLEMIRFIYTGKVNGIETMIEDLAIAAKKFALHTLLIICEQVMIKIMSIHNVVSFLLVADKVKMKELKAMAIEFVTMSGSNVIDQPSFKTLPSKIIFKICSNLANKYK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -