Basic Information

Insect: Tricholauxania praeusta
Gene Symbol: -
Assembly: GCA_949775025.1
Location: OX459031.1:120920314-120925418[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 2.3 3.1e+02 3.4 0.2 1 23 327 351 327 351 0.84

2 13 0.00018 0.023 16.4 0.1 1 23 356 379 356 379 0.94

3 13 0.00064 0.083 14.6 1.8 1 23 387 409 387 409 0.98

4 13 0.00029 0.038 15.7 1.8 1 23 416 438 416 438 0.98

5 13 4.2e-05 0.0055 18.3 2.3 1 23 444 466 444 466 0.98

6 13 4.5e-05 0.0059 18.2 1.0 1 23 473 495 473 495 0.98

7 13 2.8e-05 0.0037 18.9 0.4 1 23 501 523 501 523 0.97

8 13 0.00013 0.017 16.8 0.2 1 23 529 551 529 551 0.97

9 13 4e-06 0.00052 21.6 2.7 1 23 557 580 557 580 0.97

10 13 0.00059 0.077 14.7 3.8 1 23 586 609 586 609 0.97

11 13 0.0009 0.12 14.1 3.4 1 23 615 637 615 637 0.98

12 13 0.00015 0.02 16.6 0.5 1 23 643 665 643 665 0.96

13 13 0.003 0.39 12.5 0.2 1 22 671 692 671 695 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	2.3	3.1e+02	3.4	0.2	1	23	327	351	327	351	0.84
2	13	0.00018	0.023	16.4	0.1	1	23	356	379	356	379	0.94
3	13	0.00064	0.083	14.6	1.8	1	23	387	409	387	409	0.98
4	13	0.00029	0.038	15.7	1.8	1	23	416	438	416	438	0.98
5	13	4.2e-05	0.0055	18.3	2.3	1	23	444	466	444	466	0.98
6	13	4.5e-05	0.0059	18.2	1.0	1	23	473	495	473	495	0.98
7	13	2.8e-05	0.0037	18.9	0.4	1	23	501	523	501	523	0.97
8	13	0.00013	0.017	16.8	0.2	1	23	529	551	529	551	0.97
9	13	4e-06	0.00052	21.6	2.7	1	23	557	580	557	580	0.97
10	13	0.00059	0.077	14.7	3.8	1	23	586	609	586	609	0.97
11	13	0.0009	0.12	14.1	3.4	1	23	615	637	615	637	0.98
12	13	0.00015	0.02	16.6	0.5	1	23	643	665	643	665	0.96
13	13	0.003	0.39	12.5	0.2	1	22	671	692	671	695	0.92

Sequence Information

Coding Sequence: ATGgacaaaatgaaatgttttttgtgtGATCATGAGTTTATTGAGGGTGAAGAACCCTGGCTGATATTTGAAAAACGCGTACAAGAAGATGGGCAAGAGGAGTGTCCACTCTCGGTAATATTGGCATCGGCATTGGGACGCGAGCTGGAAGAGGAGACGTCACACTCTAAGCTGCTTTGCGATTCCTGCAATGCGACCGTGCTGGACTTTGAAAGCATTGAGCAGCGTTTCTATGAAATGCGTTTTCGCATCCTCAACGAgtataataaaatggcaaaacgCAACGATTTGGCGACCATAGCAATCGAAATCAATGGTGTGCTGCAAAATATTGAAGATGTTGAAACAGGCACTCTTTCCATCATCGCAAATAACAATTTTCCAGTAACTTTGCAAACAATACAAGAGGCGGAAACTGTTGTGCCTAAATTGGAGCTTGAGGAATTGAGTTATGAAGCGCTATCCGCAGACATAGTTGAACAAGTGTCAGACAATGATATTTATGTTGATGAGTCGTCTGTGAGTGCAATTGCTGTTGTAGAACAAATTGGTGATGATTCTACTACTGTAATAGCGacaaataataacatttttggccAAGAGTTAATCTCAACTTCagaagaaattgttaaaaacgAATCAATGGAATACAATGTAAATGAAGAATTGTGTGAAAATATAATTGACGTTGAAGATGTCGAAGAAATTGATGCTGATGatatgtATTATGACATAATCGAACAAAGCTCTCACATCAGCAGAGAAGACGAAGAAGAAAGCGCTGCTAGTTCGAACATACCAGATCGTCTGTACATTGATTCTGCAGATATGATATACGCCAGTGTTGTGAACGAAAACTGTGTAGATGAGGAGGTAATTACTACTGCTGCATCTACGCAAAAGCGCCAACTTACACGTGTACCTCGCCAGTTGAAAGATACACATCCGCCCATGTATGAACAGCAGCAAGGAGGCAACTACACTTGCCTGCTGTGCGATAACAAACCACAATATGATCCACAAGAATTTTCCGAACATATGCGCACCGAACACAACTATCGGTTTTACACATGTGATTTATGTGGCAATGGATTTGCACGACGGCAGGATCTCAACGATCACATGGATGAGCAACATGGCAGCAATGAACAGGGCTCCTTTGAATGTGAGACGTGTTACCGCGTATTTGCAAATTATCGTCTATTTCGCATACACAAACGTATGCATTACACAAGTATGAAACAGTTCGAATGCAATGAATGCCATCGTAAATACGGTTCGAAAAATTTACTTGATGAGCATATGAACATGCATACCGGACAACGTCCATATAAATGCCCTCAATGTCCTAAAGATTTTGCCTCAAAATATACGTTACATTCACACTCCAAAATACACACTGAACGTCAGCGTCCCTTCCAATGCGATGTGTGCGATAAggcttttttaaatcaacagaATTTGACTCAACATCGCAAACTGCACTCTGGCGTAAAATCCTTTGTTTGTGACATATGCTCTAAGGCTTTTGGTACGCAGCATAATTTGTTGGTGCACAAAATTGTGCATACGGGCAACAAACCGTTCATTTGTCGTACTTGTGGAAAAGCTTTTGCGCGTCGCGCTGAAATTAAAGATCATGAGCGTATTCATACCGGTGAACGCCCATTTAAATGCGATATTTGTCACATGGCCTTTGCTCAACGTTCTAATCTAACATCACATCGCAAATCGACGCATTTTAATGAGAAGCTGCACAAATGCGATCAATGTGAACGCTCTTTTAAGCGACGCCGGCTGCTTGATTATCACATTCAGTCGACACACACCGGTGAGCGTCCGCACAAGTGTGAAATTTGTGGTGCCTCATTTGTTTATCCCGAacatcataagaaacatatgctCATTCACTTGGGCATCAAACCATTCGCGTGCGAGGTTTGTGGCAAGCAATTTAATAGTCGCGATAATCGTAATGCCCACCGTTTTATACATAGCGATAAAAAGCCTTATGAATGTTTGGAATGTGGTTCAGGTTTTATGCGTAAGCCGCTTCTTTTGGCGCATATGAAACAAACGAAGCATTCGAATGACACGATCAttgtaaatcaaccacaaatTGATTTGAGTAATAATACGCTCGCTTTGAATATTGGTGGTAAAGAGGATGATGACGATGATATAGTGGAGGAAATTGATTCAACATCGAATTCACAAGGCGAAATAGTAGCTGATGGTGATTCGGTTAACATGAATGAATCATATGAACATATGATGCAGCGTGCTGAAAGTATTTTAGCAGCTGTTgataataatgatgatgataGCAATGATGCTATCACTAGGGTAAGCGGACAACTGATAAAAGATGAAATTGGCGatgtaaaatatttgcaatttgaGGAACTTGATGGTGATGGTCATCAGACACTCACTTGGGTGGACATAGGCGATAAGAATAGTTAG
Protein Sequence: MDKMKCFLCDHEFIEGEEPWLIFEKRVQEDGQEECPLSVILASALGRELEEETSHSKLLCDSCNATVLDFESIEQRFYEMRFRILNEYNKMAKRNDLATIAIEINGVLQNIEDVETGTLSIIANNNFPVTLQTIQEAETVVPKLELEELSYEALSADIVEQVSDNDIYVDESSVSAIAVVEQIGDDSTTVIATNNNIFGQELISTSEEIVKNESMEYNVNEELCENIIDVEDVEEIDADDMYYDIIEQSSHISREDEEESAASSNIPDRLYIDSADMIYASVVNENCVDEEVITTAASTQKRQLTRVPRQLKDTHPPMYEQQQGGNYTCLLCDNKPQYDPQEFSEHMRTEHNYRFYTCDLCGNGFARRQDLNDHMDEQHGSNEQGSFECETCYRVFANYRLFRIHKRMHYTSMKQFECNECHRKYGSKNLLDEHMNMHTGQRPYKCPQCPKDFASKYTLHSHSKIHTERQRPFQCDVCDKAFLNQQNLTQHRKLHSGVKSFVCDICSKAFGTQHNLLVHKIVHTGNKPFICRTCGKAFARRAEIKDHERIHTGERPFKCDICHMAFAQRSNLTSHRKSTHFNEKLHKCDQCERSFKRRRLLDYHIQSTHTGERPHKCEICGASFVYPEHHKKHMLIHLGIKPFACEVCGKQFNSRDNRNAHRFIHSDKKPYECLECGSGFMRKPLLLAHMKQTKHSNDTIIVNQPQIDLSNNTLALNIGGKEDDDDDIVEEIDSTSNSQGEIVADGDSVNMNESYEHMMQRAESILAAVDNNDDDSNDAITRVSGQLIKDEIGDVKYLQFEELDGDGHQTLTWVDIGDKNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00972428;
90% Identity: iTF_00972428;
80% Identity: -