Mpla028118.1
Basic Information
- Insect
- Meiosimyza platycephala
- Gene Symbol
- -
- Assembly
- GCA_963662105.1
- Location
- OY759211.1:90003576-90007675[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.2 5e+02 2.3 0.2 2 23 359 382 358 382 0.72 2 13 0.00018 0.018 16.3 0.1 1 23 387 410 387 410 0.94 3 13 0.00066 0.063 14.6 1.8 1 23 418 440 418 440 0.98 4 13 0.028 2.7 9.4 1.3 1 23 447 469 447 469 0.96 5 13 4.4e-05 0.0042 18.3 2.3 1 23 475 497 475 497 0.98 6 13 4.6e-05 0.0044 18.2 1.0 1 23 504 526 504 526 0.98 7 13 2.9e-05 0.0028 18.8 0.4 1 23 532 554 532 554 0.97 8 13 0.00013 0.012 16.8 0.2 1 23 560 582 560 582 0.97 9 13 4.1e-06 0.00039 21.5 2.7 1 23 588 611 588 611 0.97 10 13 0.00061 0.058 14.7 3.8 1 23 617 640 617 640 0.97 11 13 0.00093 0.089 14.1 3.4 1 23 646 668 646 668 0.98 12 13 0.00015 0.015 16.5 0.5 1 23 674 696 674 696 0.96 13 13 0.0044 0.42 12.0 0.6 1 22 702 723 702 726 0.92
Sequence Information
- Coding Sequence
- ATGGCGGAATTGGTAGCAACGACGCAGCCGGCGCTTACGGCTGAAATTCAGCAGCCACCACAGTCCTTTGTGTCGCCGCAGCAAACAGAATTTTTCATCGAGAAAATGAAATGTTTCTTGTGTGATCATGATTTTATTGAGGGTGAAGAACCCTGGCTGATATTTGAAAAGCGCGTACAAGAAGATGGCCAAGAGGAGTGTCCACTCTCGGTAATTTTGGCGTCGGCATTGGGACGCGAGCTGGAAGAGGACACGTCGCACTCTAAGCTACTTTGCGATTCCTGCAACGAGACCGTACTGGACTTTGAAAGCATTGAACAGCGTTTCTATGAAATGCGTTTTCGCATCCTCAGCGAGTACAATAAAATGGCGAAACGCAATGATTTGGCAACCATAGCAATCGAAATTAATGGTGTACTGCAAAATATCGAAGATGTTGAAACTGGCACTCATGCCGTTATCGCTGATAATACTTTTCCAATAACTTTCCAAACAATTCAAGAGGCGGACGTTCTTGTGCCTAAAGTGGAGCCTGAAGAAGTGAGTTATGAAGCGCTATCCGCAGATATTATTGAACAAGTATCGGACAATGAGATTTATGTTGATGAGTCATCAGTGAGTGGAATTGCTGTTGTAGAACAAAGTGATAATTCTACTACTGTAATAGCGACAAATGAAAACTTTATTGGTCAAGAGTTAATCTCAACTTCAGAAGAAATCGTTAAAAACGAATCGATGGAATACAATGTAAATGAAGAATTGTGTGAAAATATAATTGACGTTGAAGATGTCGAGGAAATAGATGCTGATGatatgtATTATGATATAATCGAACAAAGCTCTCACATCAGCAGAGAAGACGAAGAAGAAAGCGCTACTAGTTCGAACTTACCAGATCGTCTGTACATTGATTCTGCAGATATGATATACGCCAGTGTTGTGAACGAAAACTGTGTAGGTGAGGAGGTTATTACTACTGCAGCATCTACGCAAAAGCGCCAACTTACACGTGTACCTCGTCAGTTGAAAGATACACATCCACCCATGTATGAACAGCAGCAAGGTGGCAACTACACTTGCCTGCTGTGCGAAAACAAACCACAATATGATCCACAAGAATTTTCCGAACATATGCGCACTGAACACAATTATCGGTTTTACACATGTGACTTATGTGGCAATGGATTCGCACGACGGCAGGATCTCAACGATCACATGGATGAGCAACATGGCAGCAATGAACAAGGTTCCTTTGAATGTGAGACGTGTTATCGTGTATTTGCAAATTATCGACTGTTTCGCATACACAAACGTATGCATTACACAAGTATGAAACAGTTTGAATGCATTGAATGTCACCGTAAATACGGTTCAAAAAATCTACTTGATGAGCATATGAACATGCATACAGGACAACGTCCATATAAATGCCCACAATGTCCTAAAGATTTTGCCTCAAAATATACGTTACATTCACACTCAAAAATACACACTGAACGTCAGCGTCCCTTCCAATGTGATGTGTGCGATAAGgcttttttaaatcaacagaaTTTGACCCAACATCGCAAACTACACTCTGGCGTAAAATCATTTGTTTGTGACATATGCTCTAAGGCTTTTGGTACGCAGCATAATTTGTTGGTGCACAAAATTGTGCATACAGGCAACAAACCTTTTATTTGTCGTACTTGTGGCAAAGCTTTTGCTCGCCGGGCTGAAATTAAAGATCATGAGCGTATTCATACCGGTGAACGTCCATTCAAATGTGATATTTGTCACATGGCCTTTGCTCAACGTTCTAATTTAACATCACATCGCAAATCAACGCATTTTAATGAAAAGTTGCACAAATGCGATCAATGTGAACGCTCTTTTAAGAGACGTCGGCTGCTTGATTATCACATTCAGTCGACACACACCGGTGAGCGTCCACACAAGTGTGAAATTTGTGGTGCCTCATTTGTTTATCCCGAACATCATAAGAAACATATGCTTATTCACTTGGGCATCAAACCATTCGCGTGTGAGGTTTGTGGTAAACAATTTAATAGTCGCGATAATCGCAACGCCCACCGTTTTATACATAGCGATAAAAAGCCTTACGAATGTTTGGAATGTGGTTCAGGTTTTATGCGTAAACCGCTTCTTTTGGCGCATATGAAACATACTAAGCATTCAAATGACACAATCATTGTAAATCAACCACAAATCGATTTGAGTAATAATACCCTTGCCTTGGGCATTGGTGGTAAAGAGGACGATGATGAGGATATAGTGGAAGAAATTGATTCAACGTCGAATTCTCAAGGCGAAATTATAGCTGATGGTGACGCTATTAACATTGTTGAATCATATGAACATATGATGCAGCGTGCTGAAAGTATTTTAGCAGCTGTtgataataatgatgatgacaGCAATGATGCCATCACTAGGGTAAGCGGACAACTAATAAAAGATGAAATTGGCGatgtaaaatatttgcaatttgaggaacttgatggtgATGGTCATCAGACACTCACTTGGGTGGACATAGGCGATAAGAATAGTTAA
- Protein Sequence
- MAELVATTQPALTAEIQQPPQSFVSPQQTEFFIEKMKCFLCDHDFIEGEEPWLIFEKRVQEDGQEECPLSVILASALGRELEEDTSHSKLLCDSCNETVLDFESIEQRFYEMRFRILSEYNKMAKRNDLATIAIEINGVLQNIEDVETGTHAVIADNTFPITFQTIQEADVLVPKVEPEEVSYEALSADIIEQVSDNEIYVDESSVSGIAVVEQSDNSTTVIATNENFIGQELISTSEEIVKNESMEYNVNEELCENIIDVEDVEEIDADDMYYDIIEQSSHISREDEEESATSSNLPDRLYIDSADMIYASVVNENCVGEEVITTAASTQKRQLTRVPRQLKDTHPPMYEQQQGGNYTCLLCENKPQYDPQEFSEHMRTEHNYRFYTCDLCGNGFARRQDLNDHMDEQHGSNEQGSFECETCYRVFANYRLFRIHKRMHYTSMKQFECIECHRKYGSKNLLDEHMNMHTGQRPYKCPQCPKDFASKYTLHSHSKIHTERQRPFQCDVCDKAFLNQQNLTQHRKLHSGVKSFVCDICSKAFGTQHNLLVHKIVHTGNKPFICRTCGKAFARRAEIKDHERIHTGERPFKCDICHMAFAQRSNLTSHRKSTHFNEKLHKCDQCERSFKRRRLLDYHIQSTHTGERPHKCEICGASFVYPEHHKKHMLIHLGIKPFACEVCGKQFNSRDNRNAHRFIHSDKKPYECLECGSGFMRKPLLLAHMKHTKHSNDTIIVNQPQIDLSNNTLALGIGGKEDDDEDIVEEIDSTSNSQGEIIADGDAINIVESYEHMMQRAESILAAVDNNDDDSNDAITRVSGQLIKDEIGDVKYLQFEELDGDGHQTLTWVDIGDKNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01486511;
- 90% Identity
- iTF_01486511;
- 80% Identity
- -