Tpra028634.1
Basic Information
- Insect
- Tricholauxania praeusta
- Gene Symbol
- Zfy1
- Assembly
- GCA_949775025.1
- Location
- OX459030.1:109903935-109910305[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.34 44 6.0 0.3 2 23 18 42 17 42 0.91 2 19 0.002 0.26 13.1 0.4 1 23 48 70 48 70 0.98 3 19 0.00053 0.069 14.9 0.9 2 23 81 104 81 104 0.97 4 19 0.11 14 7.6 4.4 1 23 110 133 110 133 0.98 5 19 0.00022 0.029 16.1 4.0 2 23 162 183 161 183 0.95 6 19 5.4e-05 0.0071 18.0 4.6 1 23 189 212 189 212 0.96 7 19 2.7e-05 0.0036 18.9 4.0 1 23 218 241 218 241 0.97 8 19 0.01 1.3 10.8 5.1 1 23 252 275 252 275 0.95 9 19 7.2e-06 0.00095 20.7 0.9 1 23 385 407 385 407 0.98 10 19 2.4e-05 0.0031 19.1 2.2 1 23 413 435 413 435 0.98 11 19 0.0085 1.1 11.1 0.5 1 23 449 471 449 471 0.97 12 19 0.002 0.26 13.0 0.8 1 20 479 498 479 500 0.93 13 19 1.5e-05 0.0019 19.8 3.9 1 23 568 590 568 590 0.98 14 19 0.0012 0.16 13.7 0.4 1 23 597 620 597 620 0.94 15 19 4.5 5.8e+02 2.5 8.7 1 23 626 648 626 648 0.94 16 19 1.7e-05 0.0023 19.5 3.8 3 23 731 751 730 751 0.99 17 19 2.8e-05 0.0037 18.9 0.8 1 23 757 779 757 779 0.98 18 19 0.00022 0.028 16.1 0.3 1 23 786 808 786 808 0.97 19 19 5.7e-05 0.0075 17.9 3.3 1 23 814 837 814 837 0.96
Sequence Information
- Coding Sequence
- ATGTCGGAAACTGCCAATTTACTTGAAGAATCAAGCGCTTTAATTAATAATCAATGTAAATACTGCACTTCAGTTACAACTTTTGACAGCTCCACAGCACTACGAATTCACGAGCAAGATGTGCATATCTACATTAAAGAGTATCAATGTGACAAGTGTTCACTCAGTTTCAACCAATTGCTAAACTATGAACTACATGCTGCAACGCATATAACAAAAGAACTAGCTACACAGCCCGGCAGATGTCCTTTGATAAAATGTGGACAAAGCTTCCAACGAATGACAGCGCTAAGGACTCATTTGAAGAAACACGCTGTTAGTGAGAACTTCAGGTGCAATCACTGTTGCAAAGAATTCGAATATGTGCTGCTTTTAAAAGATCACATGAACACTGTGCACTATGCTGGTGTTGATGGAAAAGTAGAAAGGATGACAAAGTTGCACCCAAGACAGAAACTTAGTGTTATTAGCAATGGCAAATGTGAGTGTAATAAAtgtggcaaacaatttaataaacCCTGCTTACTACGACGTCATGTTATTGTTCATTCGAGTGAAAAACCTTATCAGTGTGAATCCTGCAAGATAAGTTTTTCACAAAAGTCAACGTTGCAACGTCATTATCAACACCAGCATGTTGGTGAGAAATTACACAAATGTCGAGAATGTAAAACTAGttttgcacAGAAAACAAATTTGCTCTCGCACATACGACGTACACATCCAGTAGAAGGTTCAACAGCAAAAGATAGATTTGTCTGTGATAACTGCACTTGCACTTTTACTAAGCTCAACAGTTTAAATCGTCACAAGACGAAAAACCATCTTACATCGGAGTCAGCACGCTTAGCACAACTGGAAATCGCATTTCACGATGAAACGCCTGTTGATGATGCAGCTGAACTAGCACGAAATGTTTTGTTGGAGTTGAAGAAACTTCAAGCCGATATGGAACCTGAATCCGTAAAAATGCAAACATCTACAAAAGAATGCATAGCTAATGAAACATCGGTTGCAGACACCGTACAAACATTAACAATTGTTGATGATTCTGCGACAGATATAATGCAAGTAGCTGATAAGCTTAATCCGTTGAAGAAATGTTATACTATTGATGTGCAATGCATAAAACGTAATGATGGCATAGCTTATTATGTGTGTGATTACTGTGCAAAGGAGTTTAGAAAATCGTATGACTTGATAAGacaTCGCCGCGGACATCGAAACGAAAAGCCTTATAATTGTGAACACTGCAGCAAAGCATttgctacaaaaacaaaattggaagCGCATAAAAAAGTTCATGGTATATCTTCCGAAGACGAAGGCCGTATAAATAATCAATACATCTGTAACATATGTGAACAGAAATTCGATTCAATTCGTCAGCTAGATTCGCATAACAGATTACATCTTCAAACGCATAGTTTTCTTTACGTCTGCTCGATTTGTTCACGTACTTTTAGCACTTTAGGAATGTTTTCGACACATAAGCACGTCACGTCAGACTATGAACTTGAAGTTCTTACCAAACTTCTGCCAGAACCGACAAATATAAGCGAATCAATCGATAAAGACAACTTGAAATGCACTCAACTAACAACACAATTAAACCAAAGTAATAAAAGTGATATTAAATTGCAAAAGTTATCACACTTGACGTGGCATAAAAAAAAGCATCAGCACTATCAAgggttaaaatttaaatgcagcaaTTGTGGCCGttgcTACTCTACCAAAAGCGCACTAaacttacattttaaaattcatacagCGCACAGTAGacattttgcttgtaaaaactgtgtggaaaaaaaatttacaacaaaagcCGGATTAATACGTCATATGCTCATAcataatcatataaaaaatttcaaatgtatcTATTGTGAAAAAACCTTCAAAACTAAAGAAAACTGCAAGTGCCACATGAAACTACATTTAAGGGCACTGCTTGAACCAAATAATTCGAAACTTGCAGCAGAACATCATCCAGCAAAAGTATGTCAGCTTGTTGTGCAGGAAACTAAAAACCAATCAACAACACCAAAATTCATCGAAATACAAATGCTTACAAAATATCGTAGGCATAAgcaacacaaaaatataaccgtTGAAGCTATGCCATCAGCAGCCGGCACATTTCAAACCGTTAAGAATGACGTTTCAAGTAGGGAAAAGAATTTATGTTCCATGTGCCAGTGTAGTTTCAAAAAACCTAGCGATTTACAGCGTCATCTACGAACGCATACTAAAGAGCGACCATTTTCATGCGAATTATGTTCCAAGTCTTTTGCGTTACGATCTACATTAAAAGAACATTTATTAACGCATGCGCAAAAGCGTTCTACATACGATTGTCAAGTGTGTGGTAAGCGTTATGCATCAAAAAAAGTTCTCGTTCTACATTTACGTTTACACACCGGAGAGCGTCCATTTAGTTGTGAACACTGTGAAAAAACATTTCGTACTTCTGGGCATCGCAAAGCACACATCAAAGCTGCAcataaacaaatataa
- Protein Sequence
- MSETANLLEESSALINNQCKYCTSVTTFDSSTALRIHEQDVHIYIKEYQCDKCSLSFNQLLNYELHAATHITKELATQPGRCPLIKCGQSFQRMTALRTHLKKHAVSENFRCNHCCKEFEYVLLLKDHMNTVHYAGVDGKVERMTKLHPRQKLSVISNGKCECNKCGKQFNKPCLLRRHVIVHSSEKPYQCESCKISFSQKSTLQRHYQHQHVGEKLHKCRECKTSFAQKTNLLSHIRRTHPVEGSTAKDRFVCDNCTCTFTKLNSLNRHKTKNHLTSESARLAQLEIAFHDETPVDDAAELARNVLLELKKLQADMEPESVKMQTSTKECIANETSVADTVQTLTIVDDSATDIMQVADKLNPLKKCYTIDVQCIKRNDGIAYYVCDYCAKEFRKSYDLIRHRRGHRNEKPYNCEHCSKAFATKTKLEAHKKVHGISSEDEGRINNQYICNICEQKFDSIRQLDSHNRLHLQTHSFLYVCSICSRTFSTLGMFSTHKHVTSDYELEVLTKLLPEPTNISESIDKDNLKCTQLTTQLNQSNKSDIKLQKLSHLTWHKKKHQHYQGLKFKCSNCGRCYSTKSALNLHFKIHTAHSRHFACKNCVEKKFTTKAGLIRHMLIHNHIKNFKCIYCEKTFKTKENCKCHMKLHLRALLEPNNSKLAAEHHPAKVCQLVVQETKNQSTTPKFIEIQMLTKYRRHKQHKNITVEAMPSAAGTFQTVKNDVSSREKNLCSMCQCSFKKPSDLQRHLRTHTKERPFSCELCSKSFALRSTLKEHLLTHAQKRSTYDCQVCGKRYASKKVLVLHLRLHTGERPFSCEHCEKTFRTSGHRKAHIKAAHKQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00972409;
- 90% Identity
- -
- 80% Identity
- -