Tpra021199.1
Basic Information
- Insect
- Tricholauxania praeusta
- Gene Symbol
- MBD2
- Assembly
- GCA_949775025.1
- Location
- OX459029.1:163172888-163176312[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-25 1.3e-21 77.2 0.0 1 75 8 77 8 79 0.95 2 2 1.5e-05 0.11 13.4 0.0 26 75 158 216 144 218 0.86
Sequence Information
- Coding Sequence
- atGCAAATCAACTCAATAACGATTGAACGCAAACGTGTTGATTGTAACTCTTTACCTAAAGGTTGGCAGCGGGAGGAGGTGTTACGCAAATCCGGTCTATCCGCTGGAAAAGTTGATGTTTACTATTACAGTCCTGCAggcaaaaaaatcgaaagtaaACCACAATTAGCACGTCAGCTTGGCGATGCCATAGATATTTCTACCTTTGATTTTCAAACTGGAAAGATAATGAAAAATCTACCGCCGCCATCCATTTCTTTATATCGATGCGGCAGTGGTGGTGGAGCAGCTGCAACTGGTGTGGTTCCAGTTCCAGTTGCTGGAGCCTCAACATCTGCCAATTTGCCAACAACTGCAGCAAACAACTTAAAGCGTAAATATAAATCACAACAAGCAATAACTACAAGCAGTAGCATCAATCCTAGTAGTTCAACTGCATCCTCATCAAACTTACGTCAGCAATTAGAGCTCAGTCGCGCTTCACGTACAGATGTTTCCTTAGTACCGCCGATACGGCAAACAGCTTCCATATTTAAGCAACCCGTAACGGTTGTACGAAATCATGAAAATTCAAGGACAAAACATGACAACAAGCATGGATGtcaagaaaaaccaaaacaagtgtTTTGGGAAAAACGCTTAGAACGTTTACGGGCTTGTCATGCTACTGGGGAAGAATTCGATAATATTGGACTTCCGAAAGGAATACGTTCCGTTGGACCTAATGTTAATGAACAAACTGTTTTGCAATCACTGGCAACTGCGTTACATGTGCTCAATGCACCTGTTACTGGACAAACTTCAACAAAGACTGACTTAACGAGAAATTCTCAAGCATTTTTAAATCCAGATCAACCACTTATGCAGGCTGTCATAGTTTCGGAGGAAGATATACGACGGCAGGAGGAACGTGTCAATGTGGCAAGAAAAAAACTGCAAGAAGCACTCgcctaa
- Protein Sequence
- MQINSITIERKRVDCNSLPKGWQREEVLRKSGLSAGKVDVYYYSPAGKKIESKPQLARQLGDAIDISTFDFQTGKIMKNLPPPSISLYRCGSGGGAAATGVVPVPVAGASTSANLPTTAANNLKRKYKSQQAITTSSSINPSSSTASSSNLRQQLELSRASRTDVSLVPPIRQTASIFKQPVTVVRNHENSRTKHDNKHGCQEKPKQVFWEKRLERLRACHATGEEFDNIGLPKGIRSVGPNVNEQTVLQSLATALHVLNAPVTGQTSTKTDLTRNSQAFLNPDQPLMQAVIVSEEDIRRQEERVNVARKKLQEALA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01415016;
- 90% Identity
- iTF_00257824;
- 80% Identity
- -