Tpre008365.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:584501-586446[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.046 19 5.0 0.0 24 48 139 163 126 169 0.87 2 11 5 2.1e+03 -1.6 0.1 23 48 167 192 161 198 0.72 3 11 1.3 5.4e+02 0.3 0.2 23 48 196 221 190 225 0.82 4 11 0.089 37 4.0 0.0 22 48 224 250 220 255 0.87 5 11 0.0016 0.67 9.6 0.1 23 49 283 309 275 314 0.86 6 11 9.4 3.9e+03 -2.4 0.0 23 32 312 321 309 337 0.72 7 11 0.1 43 3.8 0.0 23 50 341 368 334 372 0.87 8 11 0.0024 0.99 9.1 0.0 23 48 370 395 367 401 0.86 9 11 1.7 6.9e+02 -0.0 0.0 23 49 399 425 392 430 0.79 10 11 0.16 65 3.2 0.1 22 48 427 453 421 458 0.89 11 11 4.1 1.7e+03 -1.3 0.0 27 52 461 487 459 488 0.83
Sequence Information
- Coding Sequence
- ATGGAAAGCGGAGAGGACGCAGTCAgAGTGAAGGAAGAACTACCGAATGATAATTGGCCCGATGCAagtgataattattttttcgattcaatACACTCTTGCAAAGCTGAAAATGTTGAAGTTTTGCCGTTCCATGAATCATCGgcaaatcaTGTGAATGAGGTTATGGAGTTTGCGAAAGTAGATAAGAAAATTTACatcgattttgagtgcaaagacgTCAAACCTGAACTGAAGCCTTTATCGACAACCATCTGTAAAACTGAGTATCAAAATTATCCACCTgccgtaaaaattgaaaatgaaaatcagatCATTAAcgcgaatgaaaatatatttattgattttgagtgcaaagatgttaaaattAAACTGAAGCCTTTATCGACAACCGTTTGCAAAAGTTATCCAACaCCTTTCGAGTGtaacatttgtcaaaaatcatttggacaaaaaagtaatctcgATAAACACGTAAATACAGTGCATGATCGTAGAAAACcttttgagtgtgagatttgccacaaatcatttggataccagaatATATTCAAAAGTCACATCaatgtagtacataatcagagcaaacccttcgagtgtgagatttgtcacaaatcatttgccTACCAATGCCACCTTAAACCtcacataaatgtagtacataatgggaacaaacccttcgaatgtgatatttgtcataaattatttggacTTAAAAGTGACCTTAAAAGACATAtaagtgcagtacataatcgtcaCAAaaccttcgaatgtgatatttgtcataaatcatttggacgaaaaagttatcttaaaattcacataaattcagtacatgatcagatcaaaccctttgaatgtacAATTTGTAGCAAAACGTTTGGGCAAAGTAGTACTCTTCGTAAACACATTAGTGCAGTTCATattcggagcaaaccctttgagtgtgagatttgtcacaaatcatttgtacTAAAAAGTGGccttaaaatacatgtaagtgcagtacataatcggagtaaaccctttgaatgtgacatttgtcacaaatcatttggagaaaagggTAAACTCAATAGGCACATAagtatagtacatgataagaaaaaaccctttgaatgtgacatttgtcgcAAAACGTTTGGACAAAGTAGTACTCTGCGTAAACACATTAGCGCAGTtcataatcagagcaaacccttcgaatgcgGTATTTGttgcaaatcatttggataccaaaattacttaaaaactcacattgatgcagttcataatcgtaaaaaacccttcgaatgtgatatttgtcgcAAATTATTCGGACTAAAACATAATCTCAAATCTCATATaagtataatacataataagaGCAAAttcttcgaatgtgacatgtgtcaaaaattatttggacaaaaagttcACCTTAATAATCACGTGatgaaaatacataatttcaGCAAACCACTGAATGTGAGGTTTGTTTCCACACATTAA
- Protein Sequence
- MESGEDAVRVKEELPNDNWPDASDNYFFDSIHSCKAENVEVLPFHESSANHVNEVMEFAKVDKKIYIDFECKDVKPELKPLSTTICKTEYQNYPPAVKIENENQIINANENIFIDFECKDVKIKLKPLSTTVCKSYPTPFECNICQKSFGQKSNLDKHVNTVHDRRKPFECEICHKSFGYQNIFKSHINVVHNQSKPFECEICHKSFAYQCHLKPHINVVHNGNKPFECDICHKLFGLKSDLKRHISAVHNRHKTFECDICHKSFGRKSYLKIHINSVHDQIKPFECTICSKTFGQSSTLRKHISAVHIRSKPFECEICHKSFVLKSGLKIHVSAVHNRSKPFECDICHKSFGEKGKLNRHISIVHDKKKPFECDICRKTFGQSSTLRKHISAVHNQSKPFECGICCKSFGYQNYLKTHIDAVHNRKKPFECDICRKLFGLKHNLKSHISIIHNKSKFFECDMCQKLFGQKVHLNNHVMKIHNFSKPLNVRFVSTH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485232;
- 90% Identity
- iTF_01485232;
- 80% Identity
- iTF_01485232;