Tpre007980.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:1402796-1404076[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.02 8.5 6.1 0.0 23 49 173 199 169 204 0.88 2 5 0.47 1.9e+02 1.7 0.0 20 48 199 227 196 232 0.87 3 5 0.006 2.5 7.8 0.0 23 48 231 256 227 262 0.84 4 5 0.56 2.3e+02 1.5 0.1 23 48 260 285 257 290 0.85 5 5 0.0041 1.7 8.3 0.1 23 47 289 313 285 315 0.88
Sequence Information
- Coding Sequence
- ATGGAAAGCAAAGAGGACAGTGTTagGGTAAAACAAGAGCCGTTCGATACTTGCACAGAAGCAGGTGATGATTGCAATTATAATTTGGTGGACACttgcaaaatcaaaaactttgaCACATTCTCGTTTCATGAATCATCAacaaATAACACGAATGAGGTTATGGCATGGCgtcaagaaaaattagatgaaaaaatattcattgatttagagtgcaaagatgttaagcTAGAATTCAATTCTTTGTCTGCAAAAATTTGCAAGACTGAGTATCAAAATTATCCATCtattgtgaaaattgaaaataaaacttacaaCGGAAAAGCTAGTTTAAATGCACATATGAATACGACACATAAGGGCATTACATTATACGAGTGTGATGTgattcaaaaatcatttggatgcAAGAATaatctcaataaacacataaacTCTGTTCATGATTTTGAATATGACATTTGTCAAAAGTTTTATAGTCGCAAAGCTCATATAGATGCattaaataatcttaaaaaaccatttgaatgtgatatttgcaacAAATCATTTGGGCAAAATTATATCctcaaaaggcacataaatgcagtacacaaTTCGagaaaacccttcgaatgtgatacatgtcaaaaatcatttggacaaaaagttgatctcaaaactcatataaatacagtacataaccgaagcaaaccctttgaatgtgatatttgcaacAAATCATTTGGGCAAAATAGTACCctcaaaaggcacataaatgcagtacacaatctgagcaaacccttcgagtgtgttatttgccacaaatcatttggtcgCAAGGAGACCCTCAAAATTCActtaaatacagtacatgatcggagcaaaccctttcaatgtgaaatttgccataaatcatttggacaaaaaagggACCTCAAACATCACGTTAATGCAATACATGATCATAGCTaa
- Protein Sequence
- MESKEDSVRVKQEPFDTCTEAGDDCNYNLVDTCKIKNFDTFSFHESSTNNTNEVMAWRQEKLDEKIFIDLECKDVKLEFNSLSAKICKTEYQNYPSIVKIENKTYNGKASLNAHMNTTHKGITLYECDVIQKSFGCKNNLNKHINSVHDFEYDICQKFYSRKAHIDALNNLKKPFECDICNKSFGQNYILKRHINAVHNSRKPFECDTCQKSFGQKVDLKTHINTVHNRSKPFECDICNKSFGQNSTLKRHINAVHNLSKPFECVICHKSFGRKETLKIHLNTVHDRSKPFQCEICHKSFGQKRDLKHHVNAIHDHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485519;
- 90% Identity
- iTF_01485519;
- 80% Identity
- iTF_01485519;