Tpre006676.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:2218482-2220156[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0085 3.5 7.3 0.1 18 48 141 171 133 174 0.90 2 9 0.0044 1.8 8.2 0.4 26 48 187 209 178 214 0.87 3 9 0.026 11 5.8 0.4 26 48 216 238 210 243 0.88 4 9 2.5 1e+03 -0.6 0.1 23 45 242 264 237 269 0.79 5 9 0.15 64 3.3 0.0 23 49 271 297 265 302 0.85 6 9 0.046 19 4.9 0.1 23 48 300 325 297 331 0.83 7 9 0.44 1.8e+02 1.8 0.0 23 48 329 354 326 360 0.85 8 9 2.1 8.7e+02 -0.4 0.0 23 45 358 380 352 384 0.82 9 9 0.14 58 3.4 0.1 23 48 387 412 384 415 0.89
Sequence Information
- Coding Sequence
- ATGATGAAAAGCAGAGAGGACCCAGTCagGGTTAAAGAAGAGCCGAATGAGGATGATCCGGAAGCAGgcagaaattataatttcaatttgtcGGACTCTTATAAAGGCAAAAACGTTGAAACATTCGTGTTTTATGAATCACCAacAAATCAAATGAATGAGGTTATGTTATTACAAGgaaaattagaagaaaaattatgtgTAGAATTTGAGTGCAGAGATGTTAAGCCTGAACTGTCATTTAAATCGACAACAATCTGCAAATCAGAATACCAAAGTTCTCTGcctattgtgaaaatagaaaacgaaaatcaggttaattatattaacgaaaaaatattcaatgattttgaGTGCAGAGATGTGAGACCTGAGCAGAAGTCTTGCGAGCAATATAAGGatttagaaatattaaaaaaaacatctcaaaCCAAATCATCTAATGAGTGTAAAAtgtgtcgaaaaaaatataaacaagaAGTAAGTCTTAAAAGACATATCAACGCGAAACACAAAAGCATTAGACTACACCAATGTGAAATTTATCAGAAagccttcgaatgtgatatttgtcacaaatcactTAGCCACAAAAGAAACGTAAAAAGACATATAAATGCATTGCATGATCGTAGAAAATCGTTCGAGtgcgagatttgtcacaaatcatttgcacaAAAACAACATCTCAAAAGACacgtaaatacagtacatgaacgtaggaaacctttcgaatgtgaaatttgtcacaaatcatttggccGCAAAGGTcacctcaataaacacataacaACAATACATGATCGTATTCAatcttttgaatgtgagatttgtcagaaatcatttggagaaagaGGAAATCTAAAGAAACACATCGATGGAGTGCAttatcgtagcaaaccctttgaatgtgagatttgccatAAAACATTTAGAGATCAGAGTtatctcaaaaatcacataagTACATTACATGATCATaaaaaacccttcgaatgtgagatttgtcacaaatcatttggagaaaaaggaaCCTTAAAGAAACACATcgatgcagtacataatcgtagcaaaccctttgaatgtgagatttgtcaaaaatcatttggagaaaaaggaaCCTTAAAGAAACACATCGatggagtacataatcgaattaaaccctttgaatgtgagatttgtcacaagttATTTGTAAATCAGAATCAACTCAAAAAGCATATGAATGCAACCCATAATCTTATAAAATCATAG
- Protein Sequence
- MMKSREDPVRVKEEPNEDDPEAGRNYNFNLSDSYKGKNVETFVFYESPTNQMNEVMLLQGKLEEKLCVEFECRDVKPELSFKSTTICKSEYQSSLPIVKIENENQVNYINEKIFNDFECRDVRPEQKSCEQYKDLEILKKTSQTKSSNECKMCRKKYKQEVSLKRHINAKHKSIRLHQCEIYQKAFECDICHKSLSHKRNVKRHINALHDRRKSFECEICHKSFAQKQHLKRHVNTVHERRKPFECEICHKSFGRKGHLNKHITTIHDRIQSFECEICQKSFGERGNLKKHIDGVHYRSKPFECEICHKTFRDQSYLKNHISTLHDHKKPFECEICHKSFGEKGTLKKHIDAVHNRSKPFECEICQKSFGEKGTLKKHIDGVHNRIKPFECEICHKLFVNQNQLKKHMNATHNLIKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485296;
- 90% Identity
- iTF_01485296;
- 80% Identity
- iTF_01485296;