Tpre004280.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:1529711-1531665[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0017 0.7 9.6 0.0 23 48 240 265 232 270 0.88 2 8 0.065 27 4.5 0.2 22 48 268 294 265 296 0.89 3 8 0.56 2.3e+02 1.5 0.0 27 48 302 323 300 327 0.90 4 8 0.74 3.1e+02 1.1 0.0 26 48 330 352 324 358 0.81 5 8 1.1 4.5e+02 0.6 0.0 22 48 355 381 342 386 0.82 6 8 3.1 1.3e+03 -0.9 0.0 23 46 385 408 381 416 0.75 7 8 1.3 5.4e+02 0.3 0.1 24 48 415 439 412 444 0.84 8 8 5e-05 0.021 14.5 0.0 23 48 443 468 439 473 0.88
Sequence Information
- Coding Sequence
- ATGGAAATCAATGGTGACGTAGTTAGGTTGAAGCAAGAGATGGATGATACTTGGCTAAGTGCAGGTGaagattatattttcaattcagtTAACTCAGGCGGAGaccaaaattttgaaaaattcagctTCTATAAATCTTCGactAATCATATAAATGAGACTATGGCGTTACCTGAAAagttagataaaaaaatatccatagAATTTGAGTATAAAGATGTTAAACTTGAATTGCCGTCTCTATCGACAACTatctgcaaaactgagtaTCAAAGTTATCCAtctattgtgaaaatagaaaaccaaATTCAAAACAGTGCCATAAGTGAacctttaattattaaaaccaAGTGTCATAGTTGTTTAccaattgtgaaaatagaaaacaacGTTCAAACAAATTATCTGTATGAAAAAAGGCTCttaaatttaatagaaaaaaatttcgattacgataaaaacaatcaatttcaagaaaaatctCGAATAAAGGTGAACAGACCAAAGAAAGTAGAaatatgcatgaaaaaaacacaaaacaaatTATCTCATAAGTGTAATTTGTgtcgaaaaatttatgaagGAGAAGCGAGTATAAAAACACATATTAATACGACACATGAAAGCACTGGACAAtatgaatgtgacatttgtcacaaatcatgtTCATTCCAGGGTAACCTCATTGAGAACAtgaatacagtacatgatcgaagCAAGCCCTTTAAGTGTGACctttgttacaaatcatttagacAGAAAGGTaccctcaaatctcacatagatgcagtacataatcagaacAAACCCatcgagtgtgagatttgtcacaaatcatttggacaccAGTATGAActcaaaaggcacataaatacagtacatgatcgaattaaactttttgaatgtgcgatttgtcacaaatcatttggagaatcAAGTGTTCTCGGAcgtcacataaatgcagtacataatcggagcaaagcTTTTGAATGTGggatttgttacaaatcattttcatacaaaagTAACCCAAAATCTCATAtcaatacagtacataatcagaacaaacccttcgaatgcgatatttgtcgcaaatcatttggatacaagaatGACCTCAATaagcacataaatacagtacataatcggagcaagccttttgaatgtgagatttgtcacaaatcatttggtcgCAAGAATACTGTAAAAGATCACATagataaaatacataatttgattaaaccctttgaatgtgaaatttgtcacagaTCATTTGGTCGCAATAGTgacctcaaatctcacataaatgcagtacatgatcggatcaaacctttcgaatgtgggatttgttacaaatcatttggacaaaataGTAACCTGAAAcgtcacataaatgcagtacataatcttCTTAAACCTTAA
- Protein Sequence
- MEINGDVVRLKQEMDDTWLSAGEDYIFNSVNSGGDQNFEKFSFYKSSTNHINETMALPEKLDKKISIEFEYKDVKLELPSLSTTICKTEYQSYPSIVKIENQIQNSAISEPLIIKTKCHSCLPIVKIENNVQTNYLYEKRLLNLIEKNFDYDKNNQFQEKSRIKVNRPKKVEICMKKTQNKLSHKCNLCRKIYEGEASIKTHINTTHESTGQYECDICHKSCSFQGNLIENMNTVHDRSKPFKCDLCYKSFRQKGTLKSHIDAVHNQNKPIECEICHKSFGHQYELKRHINTVHDRIKLFECAICHKSFGESSVLGRHINAVHNRSKAFECGICYKSFSYKSNPKSHINTVHNQNKPFECDICRKSFGYKNDLNKHINTVHNRSKPFECEICHKSFGRKNTVKDHIDKIHNLIKPFECEICHRSFGRNSDLKSHINAVHDRIKPFECGICYKSFGQNSNLKRHINAVHNLLKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485320;
- 90% Identity
- iTF_01485320;
- 80% Identity
- iTF_01485320;