Tpre002093.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:2714540-2716650[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.073 30 4.3 0.0 20 49 222 251 217 256 0.88 2 8 0.15 61 3.3 0.0 26 48 257 279 251 284 0.87 3 8 0.046 19 4.9 0.0 23 44 283 304 277 309 0.88 4 8 0.004 1.7 8.3 0.2 22 48 311 337 307 343 0.87 5 8 0.71 2.9e+02 1.2 0.0 23 48 399 424 391 427 0.88 6 8 3.5 1.4e+03 -1.1 0.0 23 44 457 478 447 484 0.79 7 8 0.56 2.3e+02 1.5 0.1 21 48 484 511 479 516 0.83 8 8 0.031 13 5.5 0.2 23 50 515 542 508 547 0.84
Sequence Information
- Coding Sequence
- ATGGAAAGCAAAGAGGACACATTcagggtgaaggaagagccgaaCGACGAATGGCCCGAAGCAGGCGACGAACACAATTTTGACTCGGTGGACTCTTGCACAGTTAAAAATGTGGAAACTCAGGCAAAAGACGCGAAAGATACTACTGTGACACAACAGGATAAGTCAGGTGACAAAATACTCATAGAATTTGAGTGCAAAGGTGTTAAGCCAGAGCTGAAGGATTTATCAACAACCATCTGCAAAACGGAGCCTCAAAGTCGTCAATCtgttgtaaaaatagaaaatcaaaatcaaacaGACGAggatcatgaaaaaatatttatagaatttgAGTGCAAAGGCGTTAAGCCAAAGCTGAAGAACGTACCAACAACCATCTGCAAAACGGAGAATGAAAGTAGTCAATCTATTACGAACATAGAAAACGAAATTCAGACTAATTCTTTGATCGATAAAGATttagtaattataataaaaaaaggatttgattacgataataattgtcaatttgaagaaaaataccAATTGAAGCTTGACAAATTCAAGAAGAtgaaaatacttgaaaaaaagactCGAACTAAATTATCACGTCAGAATAATTTGTATCGAAAAACTCATAAAGAAGAAGTAAGTCTGGaaccaaatatcagtacagGAAATAAGAGCAttaaaccttttgaatgtaagatttgccacaaatcatttggactaaaaggtAACCTCAAAGCTCATGTATATTTAGTACACGATCGCAAAAAaacctttgaatgtgacatttgtcacaaattctTTGGATTCAAAAGGGACCTCAATAGGCAcgtaaagacagtacacgatcgcAGCAAACCCTTccaatgtgaaatttgtaaaaaatggtttggacaaaaaggtgaTCTCCGTAGACACGGAAAGCAAGTACACGATCGtaacaaacccttcgaatgtgagatttgtcacaaatcatttgcacaAAAAGATCATCTCAAACGGCACGTAAACGTGGTACATGATCTTGTAAAACCCTTCGAATGCGAGTTATGTCCCAAATCATTTGCATACAAAAATCGCCTCAAAGATCACATAATGTCAATACACGATGGTAaaaaatcctttgaatgtgacatatGTCACGAGTCATTTTGGTCTCAGCGACGTTTCGCAACTCACGCCAAGACAGCACACACTGGTTACAAACCCTtcaaatgtgagatttgtcataaattatttggCCGCAAGGATGCTCTCAAAGATCACATTAATTATGCACATAATCGTAGAGAGCGgttcgagtgtgacatttgtctcaaatcatttaaaataaaaacttatcTCCAAACTCACAAAGATGTAGTACATGCcggtagcaaaccctttgaatgtgacatttgccacaaatcatttggattcgcaagagtatttaaaattcacgtaagtacagtacataatcaggaAAAACCCTTtaagtgtaaaatttgtccAAAATCATTCGGAGAAAGAGGTACCCTCGCACGACACGTTCAGGCAATTCATAATCGTactaaaccctttgaatgtgacatttgccacaaatcatttagccGCACGAGTGGCCTCGAAAGGCATCTAAGTTCAGTACATCTTCGTCGTAAACCTTCcgtaaaataa
- Protein Sequence
- MESKEDTFRVKEEPNDEWPEAGDEHNFDSVDSCTVKNVETQAKDAKDTTVTQQDKSGDKILIEFECKGVKPELKDLSTTICKTEPQSRQSVVKIENQNQTDEDHEKIFIEFECKGVKPKLKNVPTTICKTENESSQSITNIENEIQTNSLIDKDLVIIIKKGFDYDNNCQFEEKYQLKLDKFKKMKILEKKTRTKLSRQNNLYRKTHKEEVSLEPNISTGNKSIKPFECKICHKSFGLKGNLKAHVYLVHDRKKTFECDICHKFFGFKRDLNRHVKTVHDRSKPFQCEICKKWFGQKGDLRRHGKQVHDRNKPFECEICHKSFAQKDHLKRHVNVVHDLVKPFECELCPKSFAYKNRLKDHIMSIHDGKKSFECDICHESFWSQRRFATHAKTAHTGYKPFKCEICHKLFGRKDALKDHINYAHNRRERFECDICLKSFKIKTYLQTHKDVVHAGSKPFECDICHKSFGFARVFKIHVSTVHNQEKPFKCKICPKSFGERGTLARHVQAIHNRTKPFECDICHKSFSRTSGLERHLSSVHLRRKPSVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485307;
- 90% Identity
- iTF_01485307;
- 80% Identity
- iTF_01485307;