Tpre011869.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:413184-416636[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.04 16 5.2 0.4 26 48 223 245 217 248 0.90 2 11 0.07 29 4.4 0.2 26 44 279 297 272 303 0.89 3 11 2.4 1e+03 -0.6 0.0 26 48 335 357 333 359 0.86 4 11 9.1 3.8e+03 -2.4 0.0 26 47 363 384 361 386 0.83 5 11 5.2 2.2e+03 -1.6 0.0 27 48 392 413 390 415 0.85 6 11 4.6 1.9e+03 -1.5 0.0 26 48 419 441 417 443 0.85 7 11 0.0058 2.4 7.8 0.1 26 48 503 525 499 527 0.90 8 11 0.1 43 3.8 0.1 26 48 531 553 527 559 0.90 9 11 0.071 30 4.3 0.0 27 48 560 581 554 583 0.90 10 11 0.35 1.5e+02 2.1 0.1 26 48 587 609 582 612 0.88 11 11 0.015 6.4 6.5 0.0 27 49 616 638 611 642 0.92
Sequence Information
- Coding Sequence
- ATGATAAAACTAGAGTCGGAGAGAACAATCAACAAAATGGAATCCAACGGTACCACCGACTACGCTGCcaaAGTAAAGAAAGAGCCCGAGGATATGTCGCTTCACGAGGATGATGATTATCGAATAGATGACGATACTTTTGATACCAAAAGTTTTCAAGACGAATCAACTCGTATGTTTAAAAGCAGCCAAGAAACTCACGAAATTCAATCGAACCCCGAGATTGAGATTGAGATCGAATGCGTAGATGTAAAGCCGATTGTAAATTCATCAATACCTAAACGGTTAGATAATTGGACGAAAGATCACTTGCTGGATATTCAAGAAAGCAGTGATTTTGAAGCTAAAGACAAGATAAAAATAGAACCCGAAGATGCTGTGAAAGAAGAATTTTCGTATGATGATATTGATAAAGATATAAGTAATGATTGCGAAATTAACGgacaaaatataaacattgatCCTCAAGAAtcagcaaaaataaatgaaaagtctATAGAGCGTGACAAGTGTTTGAAGAAATTTCCCAACAAAAGAAGTCTTAAAATTCACATGAATTCAGTGCACAGTAATAATCTGTATCCATCTCAAGcgtgtgaaaagacatttggacaaaagGATATTTTGAATGTCCATACCGATTCgatgcataataaaataactcatGCATGTGAAATATGCGGAAATGTGTTTAAACAAAGAACTTATCTCATTAGACATATCGATGCAATACATCGTAAAATCACTTAcccatgtgatatttgcggaaagacataCTCATACAAGAgtcatctcaaaatccacatcgattcggtgcataatagTGTCAGACATGCATGTAATATTTGCGAAAAGTTATTTACACAGAAgagtaatcttaaaaaacacatctATTCGATACATCGTAAaatcacacatgcatgtgatatatgccaaaagacattctcagacaacagttatctcaaaattcacgtcgattcggtgcataaagGTGTCACATATtcgtgtgatatttgcgggaAGACATTCGGACTAAAAATCAgtctcaaaaatcacatcgaGTTGGTACATAATGGCatttcacatgcatgtgatatttgcgaaaagacattctcactgaagggtaatctcaaaatccatatcgattcggtgcataatggggTCAGACACGAATGCGATATTTGCGGCAAGACATTCGCACGAAAGATCGGTGTCAAAAATCACATCGAGTTGGTTCATAATGGCatttcacatgcatgtgatatttgcgaaaagacattcacacagaAGGGTAATCGCAAAATCcatatcgattcggtgcataatggggTCAGACACGAATGCGATATTTGCGGCAAGACATTCGCACGAAAGATCGGtttcaaaaaacacatcgattctGTGCATAATAGTATTtcttacgcatgtgacaaatgcgaaaagactTTTACGCAGAAGgattatctcaaaatccatatCGATGCGGTACATCATAAAATCAagcatgcatgtgatatatgccaaaagacatacTCAGACAAGAGAAATCTCAAaagacacatcgattcggtgcataataaaataactcatGCATGTGAAATATGCGGAAATGTGTTCAAACGAAAATCTGATCTCATTAGACATATCGATGCGATACATCGTAAAATCACTTAcccatgtgatatttgcggaaagacataCTCAGACAAGAAAAATCTCAAAagacacatcgattcgatgcataataaaataactcatGCATGTGAAATATGCGGAAATGTGTTCAAACGAAAATCTGACATCATTAGACATATCGATGCGATACATCGTAAAATCACTTACCCTTGtaatatttgtggaaagacattcacacaaaaggGAAATCTCAAAACCCATATCAATTTGATGCACATTAAAAATAGTTGTGACaaatgcggaaaaaaattcgtacaaAAAAGCAAACTTTTTGCTCACATCGACGCGATACATAATCATGTTAAGCCTCACaagtataaataa
- Protein Sequence
- MIKLESERTINKMESNGTTDYAAKVKKEPEDMSLHEDDDYRIDDDTFDTKSFQDESTRMFKSSQETHEIQSNPEIEIEIECVDVKPIVNSSIPKRLDNWTKDHLLDIQESSDFEAKDKIKIEPEDAVKEEFSYDDIDKDISNDCEINGQNINIDPQESAKINEKSIERDKCLKKFPNKRSLKIHMNSVHSNNLYPSQACEKTFGQKDILNVHTDSMHNKITHACEICGNVFKQRTYLIRHIDAIHRKITYPCDICGKTYSYKSHLKIHIDSVHNSVRHACNICEKLFTQKSNLKKHIYSIHRKITHACDICQKTFSDNSYLKIHVDSVHKGVTYSCDICGKTFGLKISLKNHIELVHNGISHACDICEKTFSLKGNLKIHIDSVHNGVRHECDICGKTFARKIGVKNHIELVHNGISHACDICEKTFTQKGNRKIHIDSVHNGVRHECDICGKTFARKIGFKKHIDSVHNSISYACDKCEKTFTQKDYLKIHIDAVHHKIKHACDICQKTYSDKRNLKRHIDSVHNKITHACEICGNVFKRKSDLIRHIDAIHRKITYPCDICGKTYSDKKNLKRHIDSMHNKITHACEICGNVFKRKSDIIRHIDAIHRKITYPCNICGKTFTQKGNLKTHINLMHIKNSCDKCGKKFVQKSKLFAHIDAIHNHVKPHKYK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01484871; iTF_01485046;
- 90% Identity
- iTF_01484871; iTF_01485046;
- 80% Identity
- iTF_01484871; iTF_01485046;