Tpre002355.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:1875039-1875540[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.68 2.8e+02 1.2 0.1 27 46 14 33 10 39 0.85 2 5 0.2 84 2.9 0.0 26 48 42 64 33 69 0.88 3 5 0.032 13 5.5 0.0 23 48 68 93 64 98 0.86 4 5 0.00027 0.11 12.1 0.0 23 51 97 125 92 127 0.89 5 5 0.37 1.5e+02 2.1 0.0 23 44 126 147 123 153 0.85
Sequence Information
- Coding Sequence
- ATGatcagagaaaaaaaggatcgtATCAAACtcttcgagtgtgagatttgccacaaatcatttggataccgtAGTACACTCAAACGTCACGTCAATgaagtacatgatcgtagtaaactatttgaatgtgacatttgtcagaaatcatttggacaaaaaaatactCTTAAAACTCACATTGATACCgtacataatcgaagcaaaccctttgaatgtgacatttgtcacaaatcatttggtcaAAAAAGTACTCTCAAATCTCAcgtaaatgcagtacataatcggagcaaaccctttgaatgcaATATTTGCTACAAATCATTCGGAGAAAATGGTACCCTCAAAAAACACTTAAATATAGTACATGCTGTCAaaaaacccttcgagtgtgacatttgtcaaaaatcatttggatataaagataacctcaaaactcacgtaATGAAGGTACATGATGTTAACATACCGTAA
- Protein Sequence
- MIREKKDRIKLFECEICHKSFGYRSTLKRHVNEVHDRSKLFECDICQKSFGQKNTLKTHIDTVHNRSKPFECDICHKSFGQKSTLKSHVNAVHNRSKPFECNICYKSFGENGTLKKHLNIVHAVKKPFECDICQKSFGYKDNLKTHVMKVHDVNIP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485538;
- 90% Identity
- iTF_01485538;
- 80% Identity
- iTF_01485538;