Tpre010349.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:150477-152978[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.27 1.1e+02 2.5 0.1 26 48 198 220 188 224 0.86 2 10 1.5 6.3e+02 0.1 0.1 21 48 222 249 220 253 0.72 3 10 0.005 2.1 8.0 0.0 23 45 251 273 245 277 0.89 4 10 0.0043 1.8 8.2 0.1 20 48 277 305 273 308 0.88 5 10 3.5 1.4e+03 -1.1 0.0 23 45 338 360 335 368 0.80 6 10 0.00093 0.39 10.4 0.1 23 48 367 392 363 397 0.89 7 10 0.15 62 3.3 0.1 23 48 396 421 391 426 0.89 8 10 0.95 3.9e+02 0.8 0.1 26 48 428 450 419 457 0.82 9 10 0.012 4.8 6.9 0.1 22 48 511 537 506 541 0.91 10 10 0.96 4e+02 0.7 0.1 26 48 544 566 538 573 0.83
Sequence Information
- Coding Sequence
- ATGGAAAGTAAAGAGGGCATAATTAGGGTAAAACAAGAACCTAACGTTACTTGGACGGAAGCCGacgatgattttaatttttattcgaggAACTCTTGTAAAGTCAAAACctttaaaacatttgaatCATCGgCAAATCACACGAGAGAGGTTAAGGAATTACAAGAAAAGTTGGaccaaaaaatattcgtagAATTTGaatgcaaagatgttaaatcTGAACCGAaatctttttcgaaaaaaatctgcaaaattGAAGATCCAAGTAATCCACCagttgtgaaaatagaaaacaaaaaccaaacaaattatttgaatgaaatattcattgatttcgagtgcaaagatgttaagcCTGAATCGAAGTCTTTATTAACAACCAACTGCAAAACTGAGTATCAAAGTTATTCAACAATTGTGAAAATCGAAAACCAACTGCAGACCAATTATTTGAACGATAAAAATCCGTTGGCAAAACAAGAATTCAATCATGATGATAGTTGCGATATACCACTCAATTTTAGATTAAAATGTAGTAAATCTAGGATgagaaaatcatttaaaaagacATCTCATACCAAATTATCTTATGAGTGTAAAATGTGTcgaaaaactttcaaactcaaaggGAATCTAAAAAGACATATTAACACGGCACACAAGAGCATCAGACCatataaatgtgaaatttgtcgtAAATCATTTATATTCCAAAGTCAGCTAAAACTTCATGTTAACGCAGCACATATCAAACCCTTTAAGTGTGAGATATGTAATGAGGCATTTAGAGACCAGTTTAACCTCAAAAGGCACATTATGTCGGTACATAAACAGGAgcaacccttcgaatgtgacatttgtcaaaaatcatttagacGAAAAAGTCATCTCAAAGACCATATAATGGTAGTACATAACCGTATTAAagccttcgaatgtgaaatttgtcaaaaatctttTGGATACAGATATGCCCtcaaatttcacataaatggAATACATGaacgtagcaaacccttcgaatgtgacatttgtcaaaaatcatttggatacccgagtgatctcaagaaacacatAAATGGAGTACATAAACGTATCAAACCTTTCGAATgcgaaatttgtcacaaatcatttggacaaaaggaAAACCTTAAAAGACACATAAgtgtagtacatgatcgtagtaaaccctttgagtgtggaatttgtcataaatcatttggataccagcaTAATCTCAATAAGCACATAAacacagtacatgatcgtagtaAATCCTACGAGTGTGAggtttgtcacaaatcgtttggacaaaaaagtaccCTCAAAGTTCATATCaatgtagtacataatcatagtaaacctttcgagtgtgaggtttgtcacaaatcatttgcataCCAGTATATATTAAAAggtcacataaatacagtacataatcgcaAAAAACCCTTCGCATGTGACacttgtcaaaaatcatttgaacgAAAAAGTTACGTCTCAGCTCACATAAGTACAGTTCATGATTGtagtaaaccctttgagtgtgagatttgtcacaaatcgtttggaTACCCGAGTAATCTCAAGAGACACATAAAcatagtacatgatcgtagtaAATCCTacgaatgtaatatttgtcacaaatcatttggacaaaaaagtaccCTCAAAGTTCATATCAATGcaatacataatcgtagcaaacctttcgGGTGTGaggtttgtcacaaatcatttgcataCCAGCATATATTAAAAggtcacataaatacagtacataatcgtaacTAA
- Protein Sequence
- MESKEGIIRVKQEPNVTWTEADDDFNFYSRNSCKVKTFKTFESSANHTREVKELQEKLDQKIFVEFECKDVKSEPKSFSKKICKIEDPSNPPVVKIENKNQTNYLNEIFIDFECKDVKPESKSLLTTNCKTEYQSYSTIVKIENQLQTNYLNDKNPLAKQEFNHDDSCDIPLNFRLKCSKSRMRKSFKKTSHTKLSYECKMCRKTFKLKGNLKRHINTAHKSIRPYKCEICRKSFIFQSQLKLHVNAAHIKPFKCEICNEAFRDQFNLKRHIMSVHKQEQPFECDICQKSFRRKSHLKDHIMVVHNRIKAFECEICQKSFGYRYALKFHINGIHERSKPFECDICQKSFGYPSDLKKHINGVHKRIKPFECEICHKSFGQKENLKRHISVVHDRSKPFECGICHKSFGYQHNLNKHINTVHDRSKSYECEVCHKSFGQKSTLKVHINVVHNHSKPFECEVCHKSFAYQYILKGHINTVHNRKKPFACDTCQKSFERKSYVSAHISTVHDCSKPFECEICHKSFGYPSNLKRHINIVHDRSKSYECNICHKSFGQKSTLKVHINAIHNRSKPFGCEVCHKSFAYQHILKGHINTVHNRN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485070;
- 90% Identity
- iTF_01485070;
- 80% Identity
- iTF_01485070;