Tpre009856.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:2540524-2542472[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.00028 0.12 12.1 0.0 21 48 181 208 175 210 0.89 2 8 0.076 31 4.3 0.0 23 48 212 237 209 243 0.86 3 8 2.1 8.7e+02 -0.3 0.1 23 48 241 266 235 269 0.81 4 8 0.094 39 4.0 0.0 22 45 269 292 264 300 0.88 5 8 1.3 5.5e+02 0.3 0.0 23 48 299 324 295 330 0.82 6 8 2.4 1e+03 -0.5 0.0 23 48 328 353 324 359 0.82 7 8 3.1 1.3e+03 -0.9 0.0 23 44 357 378 353 384 0.74 8 8 0.011 4.4 7.0 0.0 23 48 386 411 379 416 0.89
Sequence Information
- Coding Sequence
- ATGatcgagagccgagagaaCACTGTTAATGCGAAGGAAGAGCCGAACGATACCTGGCCAAATACAGACGATGGTTATTTCGATTTGGTGGACTCTTGCGAAGTCAAAAACGTTGAAACATTCACGTTTCATAAATCATCagTGAATGCCGTAAACGAGGCTAtgttgtttcaaaaaaaagtagatgaaaaaatatttgtaaattttgagTGCAAATATGTTAAACCTGAACTGACGACTCTATCGAGAACCATGTGCAAAACGGAGTATCAAAATTTCCTGCCTactgtgaaaatagaaaaccaaatagaaaaaaatttctcgaatgaaaaacggctagtaattttaataaaaaaagggtttaattacaataataactGCCAATTTCAAAGACAGTTTATACTGAAGCTTGATAATTCCAAGGACGatcatatatttgaaaaaggaactcgaaaaaaaatatcacatgaGCTTAATTTGTgtcggaaaaattttataaaagaagcGAGCCTGAAAACACATGTTGAAAAAACATATAAGAGCATTAGACCATTTGATTGTCAAATTTGctataaatcatttggaaaaaattataatctcaAAAGGCACGttaatgcagtacatgatcgtatcaaacccttcgaatgtgatatttgtcataaatcatttggactgaAAAATAACCTCAGAACTCACAtaagtgcagtacatgatcgcagCAAACCTTataaatgtgacatttgtcagaaatcatttggagaaaaactGAAGTTCAGAAaccacataaatacagtacataatggtaacgaacccttcgaatgtgatatttgtcataaatcatttggacataTGAGTAatctaaaaaaacacatcaatACAGTAGATATTCGGAACAAACCAtttgaatgtaagatttgccacaaatcatttggatataagggtgacctcaataaacacataaatgcaatacataataggagcaaacccttcgaatgtgagacttgtcataaatcatttggactaaaaagtaacctcaaatctcacataaatgcaaTACATAATGGTAGCAAACcattcgaatgtgatatttgccacaaatcatttggataccagagtCACCTCAAATCTCATGTAactgcagtacatgatcgtagcaaacccttcgattgtaagatttgtcacaaatcatttggacaaaaaggtaatctcaaaactcatattgatacagtacataatcagagccaatcctttgaatgtgaaatttgtcactaA
- Protein Sequence
- MIESRENTVNAKEEPNDTWPNTDDGYFDLVDSCEVKNVETFTFHKSSVNAVNEAMLFQKKVDEKIFVNFECKYVKPELTTLSRTMCKTEYQNFLPTVKIENQIEKNFSNEKRLVILIKKGFNYNNNCQFQRQFILKLDNSKDDHIFEKGTRKKISHELNLCRKNFIKEASLKTHVEKTYKSIRPFDCQICYKSFGKNYNLKRHVNAVHDRIKPFECDICHKSFGLKNNLRTHISAVHDRSKPYKCDICQKSFGEKLKFRNHINTVHNGNEPFECDICHKSFGHMSNLKKHINTVDIRNKPFECKICHKSFGYKGDLNKHINAIHNRSKPFECETCHKSFGLKSNLKSHINAIHNGSKPFECDICHKSFGYQSHLKSHVTAVHDRSKPFDCKICHKSFGQKGNLKTHIDTVHNQSQSFECEICH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485427;
- 90% Identity
- iTF_01485427;
- 80% Identity
- iTF_01485427;