Tpre002662.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:909682-911507[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.4 6e+02 0.2 0.1 25 48 155 178 142 184 0.78 2 10 0.44 1.8e+02 1.8 0.3 19 44 181 206 175 215 0.81 3 10 6.6 2.7e+03 -1.9 0.0 23 33 214 224 206 240 0.74 4 10 0.019 8 6.2 0.0 20 49 240 269 235 273 0.87 5 10 0.0036 1.5 8.5 0.1 22 48 271 297 266 303 0.86 6 10 1.8 7.3e+02 -0.1 0.0 23 46 301 324 296 328 0.80 7 10 0.071 30 4.3 0.0 22 48 329 355 314 360 0.86 8 10 0.11 46 3.7 0.0 21 52 357 389 354 390 0.87 9 10 0.017 7 6.4 0.1 23 48 388 413 382 418 0.88 10 10 0.0028 1.2 8.8 0.0 23 45 417 439 411 442 0.88
Sequence Information
- Coding Sequence
- ATGATGGAAAACATAGAGGATACAGTTAGGGTGAAGCAAGAACGGATTGATACTCGGCCGGATGCAGGCGAcgattgtaattttaattcgatgGGCTCTTGTGACATTGGgATAAAGCAAGAACTGGATGATACTCGTCCGAATGCAGGCGACAATTATCATTCCGATCTGGATGACTCATGCGAAGTCAAAAACTTTGAAGCATTTACGTATTGCGAATCATCAgCAAATCACGTGAATGATGATATGGTGCTACGAGAGagattagatgaaaaaatatttgtagatttcgagtgcaaaaatgttaaatttgaaCTGCCGTATTCATCGAGCAACGTCTGCAAATCTGAGTATCCAAATTATCTACCTATCGTAAAAGTAGAAAACGAAATTCAGACCAATTACTTGAGTGAATGCAAGGCGGTTGAAACCTTTAGAAAAAATACTGAACACAAATTATCATGCGAGTGCAAAATGTGTCGAAAAacttatattgaaaaatcagatttAAAAAGACATATCAATACAACACACAAGGATAGCAAGAGCCTTAGAACATATACATGTTTGATTTGCCACAAGTCATATAAACGCAAAGAACACCTCAAAAATCACAGAAAAggagtacatgatcgtagtaaacccttcgagtgcaagatatgtcacaaatcatttggacacaaaGGCTATCTCAATATTCATGtgaatacagtacataatagtagcaaacccttcgaatgtgatgtttgtcacaaatcatttggacaaaaatttaaccttaaatttcacataaattcaaTACATTCTCATAAAAAACCCTacgagtgtgacatttgtcaaaaatcatttagacAAAAAGGTAATCTCAATGCTCACGTAAAAGCAGTACacgatcgtagcaaaccctttgaatgcgagatttgtcacaaattatttggaaaaaaaccCACCCTCCAAACTCACGTAcaaacagtacatgatcaaaacaaacccttcgaatgtgagatttgtcacaaatcatttggacttaAAGGTAACCTCAGATCGCATATAAAGGGAGTACATAGTAGTatcaaaccttttgaatgtgatatttgtcacaaatcatttggacaaaaaggtcaCCTCATTTCTCACGTAAATGCTGTTCATAATtttagcaaaccctttgagtgtgaaatttgtcataaatcatttggatacaaaacTAACATCAAAAGACACTtgaattcagtacataataaGATCAAACCATTtaagtgtaaaatttgtcaaaaattatttcgacaAAAAGCAAACCTTGGAAAACACGTTATGACAGTACATTAA
- Protein Sequence
- MMENIEDTVRVKQERIDTRPDAGDDCNFNSMGSCDIGIKQELDDTRPNAGDNYHSDLDDSCEVKNFEAFTYCESSANHVNDDMVLRERLDEKIFVDFECKNVKFELPYSSSNVCKSEYPNYLPIVKVENEIQTNYLSECKAVETFRKNTEHKLSCECKMCRKTYIEKSDLKRHINTTHKDSKSLRTYTCLICHKSYKRKEHLKNHRKGVHDRSKPFECKICHKSFGHKGYLNIHVNTVHNSSKPFECDVCHKSFGQKFNLKFHINSIHSHKKPYECDICQKSFRQKGNLNAHVKAVHDRSKPFECEICHKLFGKKPTLQTHVQTVHDQNKPFECEICHKSFGLKGNLRSHIKGVHSSIKPFECDICHKSFGQKGHLISHVNAVHNFSKPFECEICHKSFGYKTNIKRHLNSVHNKIKPFKCKICQKLFRQKANLGKHVMTVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485293;
- 90% Identity
- iTF_01485293;
- 80% Identity
- iTF_01485293;