Tpre012067.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:43474-46067[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0042 1.8 8.3 0.4 23 49 178 204 169 210 0.88 2 10 5 2.1e+03 -1.6 0.0 23 44 207 228 204 232 0.76 3 10 0.047 19 4.9 0.1 24 46 237 259 233 264 0.87 4 10 0.0034 1.4 8.6 0.1 24 45 266 287 263 292 0.88 5 10 0.00086 0.36 10.5 0.1 24 48 295 319 293 325 0.89 6 10 6 2.5e+03 -1.8 0.0 24 45 324 345 321 351 0.75 7 10 0.24 1e+02 2.7 0.1 22 48 351 377 342 382 0.85 8 10 0.8 3.3e+02 1.0 0.1 23 48 381 406 377 411 0.83 9 10 0.072 30 4.3 0.1 23 48 410 435 406 440 0.89 10 10 0.15 64 3.3 0.1 23 48 439 464 435 467 0.90
Sequence Information
- Coding Sequence
- ATGGAAAGCAACGGGGACGTAGttagGGTAAAAGAAGAACCAACTTGGACGGACGCAACTGATGATAATGTTTTCGATTCGATGAGCTATTGCAAAGCCGAAACGTTGGAATTTCATGAATTATCGgcaaaaggCTCGAATAAGACTGTCCTGTTAAAAGAGAggttagatgaaaaaataatcatagattttgagtgcaaaaatgtCAAACCTGAACAGTCGTCTTCATCGACTACTATTTGCAAAAACGAGTATCAAAGTCATCAATCtattgtgaaaaaagaaaatgaaaatcagacTTATTactcaaatgaaaaaaggctgatagttttgataaaaaagggatttatttatgataattattgtCAATTAAATGAGAACTCGTGTTTAAAACTTGTCAATTATGAAAATCtaaaaagtttagaaaaaacTGTTAAGAAAGAATCATTGAACAAATCCACAATGCGTCGAGAAACTCACACAACTAAAACAGgtttgaaaaatcacaaaagtacAATACCTAAAAATATTagaccctttgagtgtgatatttgtcacagatcatttggacaaaaacaaaacCTCAAATGTCACGTGAATGCAGTACActatcgtagcaaaccctttgaatgtgagatttgtcccaaatcatttggatatcaaAATCTACTGAAAAGACACATAATGAAAATACATGATCATATCATGCCGTTCGAGTGttacatttgtcacaaatcattcagTGAAAAGGATAATCTCAAAAGGCACATAATGAAAATACATGTTCGTATCATGCCGTTCGAGTGttacatttgtcacaaatcatttagagaAAAGGATAATCTCAAAAGGCACATAATGAAAATACATGTTCTTATCACGCCgttcgagtgtgacatttgtcacaaatcattcagAGAAAAGGATAATCTCAAAAGGCACATTAATGCAGTACACGATCGTattaaaccctttgaatgtggtatttgtcacaaatcttttggagaaaaaagtaaagtgaaaaatcacataaattcagtgcataatggtagcaaaccctttgagtgtgatatttgtcacaaatcatttggacgaaaacaatacctcaaaactcatataaatgtagtacataatcggagcaaacccttcgaatgtgacatttgtcacaagtcgTATTCTCGCAAAGATGTACTAAAAAAGCATatgaatgcagtacatgatcgtattaaaccctttgaatgtgatatttgtcacaaatcatttggacaaaaatcacacctcaaaactcatataaatgtagtacataatcggagcaaacccttcgaatgtgaaatttgtcacaaatcatttggacaaaaaccacACCTCAATAAACATGTAAATGTAGTACACGATCGTAGCAAATCTTTTGAATGA
- Protein Sequence
- MESNGDVVRVKEEPTWTDATDDNVFDSMSYCKAETLEFHELSAKGSNKTVLLKERLDEKIIIDFECKNVKPEQSSSSTTICKNEYQSHQSIVKKENENQTYYSNEKRLIVLIKKGFIYDNYCQLNENSCLKLVNYENLKSLEKTVKKESLNKSTMRRETHTTKTGLKNHKSTIPKNIRPFECDICHRSFGQKQNLKCHVNAVHYRSKPFECEICPKSFGYQNLLKRHIMKIHDHIMPFECYICHKSFSEKDNLKRHIMKIHVRIMPFECYICHKSFREKDNLKRHIMKIHVLITPFECDICHKSFREKDNLKRHINAVHDRIKPFECGICHKSFGEKSKVKNHINSVHNGSKPFECDICHKSFGRKQYLKTHINVVHNRSKPFECDICHKSYSRKDVLKKHMNAVHDRIKPFECDICHKSFGQKSHLKTHINVVHNRSKPFECEICHKSFGQKPHLNKHVNVVHDRSKSFE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485223;
- 90% Identity
- iTF_01485223;
- 80% Identity
- iTF_01485223;