Tpre004656.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:522090-524118[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.0034 1.4 8.6 0.0 23 48 196 221 191 226 0.86 2 7 0.00045 0.19 11.4 0.1 23 48 225 250 220 256 0.88 3 7 5 2.1e+03 -1.6 0.1 23 43 254 274 250 283 0.74 4 7 0.075 31 4.3 0.0 23 48 283 308 277 313 0.85 5 7 0.0026 1.1 8.9 0.1 23 48 312 337 306 342 0.86 6 7 0.7 2.9e+02 1.2 0.0 23 46 341 364 337 371 0.84 7 7 0.51 2.1e+02 1.6 0.1 23 46 370 393 366 397 0.83
Sequence Information
- Coding Sequence
- ATGGAAAGCAATAGTGGCGTAGTTAGGGTGAAAGAAGAGCCAAGCGAAACTTTGGCGATCGCAGGCGATGAGTACGTTTTCGACTCGCTGCACAACcatataaaaatcgaaaactatGAACCATTGCCGTTCCATGAAATATCGGCAAAATCCGAGAATAAAGATGTGCCGTTACAGGAGAggttagataaaaaaatattgatcgattttgagtgcaaaaatgtCAAACTTGAACGACctaatgtgaaaaaagaaaaccaaaATTCGACTAATTACaccaatgaaaaaagtttaataattttgataaaaaaaggattcaatTATGATGATAATTGTCAAATGAATGTCAACTCTCGTATAGAACTTGACAAATATgagaaactaaaaaatttcggaaaaactattgtacaaaaaatacgtGATTCAAACATATGTCAAAAAACTCATAAATCAAGAGCAAGTCCAAAAAATCATACGCAAACGATACTTCAAATAACTAGACCTAATGAACGTGATATTTATAACGAATCATTATCCTGCAAAAGTGGccacaaaatttatttgaatgcgGTACAAGATCGTATCAAGCCCTTTgcgtgtgagatttgtcacaaatcatttggacaaaaaagggACCTCAAAGGTCACATGAATGCTGTACATAATctgagcaaaccctttgaatgtgacatttgtcataaatcatttggacaaaaaaggaacctcaataaacacataaatgcagtacataatcggagaaaacccttcgagtgtgagatttgtcacaaatcatttggatatcagaATGTACTGAAAAATCACGTTATAACAGTACATGgtcagagcaaaccctttgaatgtgagatttgtcacaaatcattcggcATAAAAGGTAATCTCTATAggcacataaattcagtacataatcggagcaaaccctttgaatgtgaggtttgttacaaatcatttggacagaAACAAATCCTCAAACGTCATAtaagtgcagtacatgatcggagcaaaccctttgaatgtgaggtttgtcacaaatcatttggacaaaagactactctcaaaactcacataatgACAAtacatgatcggagcaaacccttcgaatgtgaaatttgccatAAATCATTTAGACGGAAAGATTACCtcaattttcacataaattcagtacataatcgtagcaattCCTaa
- Protein Sequence
- MESNSGVVRVKEEPSETLAIAGDEYVFDSLHNHIKIENYEPLPFHEISAKSENKDVPLQERLDKKILIDFECKNVKLERPNVKKENQNSTNYTNEKSLIILIKKGFNYDDNCQMNVNSRIELDKYEKLKNFGKTIVQKIRDSNICQKTHKSRASPKNHTQTILQITRPNERDIYNESLSCKSGHKIYLNAVQDRIKPFACEICHKSFGQKRDLKGHMNAVHNLSKPFECDICHKSFGQKRNLNKHINAVHNRRKPFECEICHKSFGYQNVLKNHVITVHGQSKPFECEICHKSFGIKGNLYRHINSVHNRSKPFECEVCYKSFGQKQILKRHISAVHDRSKPFECEVCHKSFGQKTTLKTHIMTIHDRSKPFECEICHKSFRRKDYLNFHINSVHNRSNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485531;
- 90% Identity
- iTF_01485531;
- 80% Identity
- iTF_01485531;