Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: -
Assembly: GCA_000599845.3
Location: NW:427503-430266[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.064 27 4.5 0.4 26 49 239 262 230 265 0.87

2 14 0.0057 2.4 7.9 0.1 24 48 266 290 263 295 0.89

3 14 3.9e-05 0.016 14.8 1.0 23 45 294 316 290 319 0.91

4 14 0.71 2.9e+02 1.2 0.1 26 48 323 345 316 349 0.87

5 14 6.6 2.7e+03 -1.9 0.0 26 46 381 401 374 410 0.80

6 14 0.034 14 5.4 0.0 23 49 436 462 429 466 0.83

7 14 0.0022 0.9 9.2 0.0 21 49 463 491 458 495 0.84

8 14 0.04 17 5.2 0.0 21 48 492 519 487 525 0.86

9 14 8.9 3.7e+03 -2.4 0.0 23 43 523 543 519 553 0.72

10 14 2.6 1.1e+03 -0.6 0.0 22 48 551 577 543 583 0.83

11 14 0.073 30 4.3 0.0 22 49 609 636 603 640 0.83

12 14 0.047 19 4.9 0.0 22 48 638 664 633 669 0.86

13 14 0.7 2.9e+02 1.2 0.1 23 44 668 689 663 698 0.76

14 14 2.7 1.1e+03 -0.7 0.0 22 48 696 722 691 728 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.064	27	4.5	0.4	26	49	239	262	230	265	0.87
2	14	0.0057	2.4	7.9	0.1	24	48	266	290	263	295	0.89
3	14	3.9e-05	0.016	14.8	1.0	23	45	294	316	290	319	0.91
4	14	0.71	2.9e+02	1.2	0.1	26	48	323	345	316	349	0.87
5	14	6.6	2.7e+03	-1.9	0.0	26	46	381	401	374	410	0.80
6	14	0.034	14	5.4	0.0	23	49	436	462	429	466	0.83
7	14	0.0022	0.9	9.2	0.0	21	49	463	491	458	495	0.84
8	14	0.04	17	5.2	0.0	21	48	492	519	487	525	0.86
9	14	8.9	3.7e+03	-2.4	0.0	23	43	523	543	519	553	0.72
10	14	2.6	1.1e+03	-0.6	0.0	22	48	551	577	543	583	0.83
11	14	0.073	30	4.3	0.0	22	49	609	636	603	640	0.83
12	14	0.047	19	4.9	0.0	22	48	638	664	633	669	0.86
13	14	0.7	2.9e+02	1.2	0.1	23	44	668	689	663	698	0.76
14	14	2.7	1.1e+03	-0.7	0.0	22	48	696	722	691	728	0.82

Sequence Information

Coding Sequence: ATGAAGGAAGAGTCGAACCTTTCTTGGACAGATGCAGGTgacgattataattttaattcggTAGTCTCTAGCGAAATCCAAAATTTTCGAACGTTCCCAGATATTAAAACATCGGCAAATTACGTGAATGTGGCAAAGCCATTtcacgatgaaaaaatattcgtcgactttgagtgcaaagatgttaaacctGGACCAACATCTTTATCATCGGCGATCTGCAAATATGAGTATCAAAATTGTGGATCtattgtgaaaaaagaaagcgaaaataaaaccaatggcataaatgaaaaaatattcgtagaTTTCGAATGCAGGGATGTGAAGTCTGAACCGAAGTCTCTATCGACAACCATCGACAAATCTGAGTCTCGAAAATTTCAACCTATAGTGaagatagaaaaagaagatcagagcaatgataaaaatgaaaatatattcattgatttcgaGTGCAAGGATGTCAAATCTGAAGTGAAACCATTATCAGAAATAACCTGCAAAACTGAGGATCAAAATTTACTACCaattgtgaaaattgaaaaccaACTGCAGACAAATtacttaaaagaaaaagatttcgTAATTTTACGAAAGAAAGAATTAAATTACGACAATGACCGTGAGATCCAAGAAAAATCccgaataaaaatgaacaaatcgGAGGAAACaaagataattgaaaaaacaactCAAATCAAATTATCTTTTGAGTGCCAAATGTGTCGAAAAACGTATAAGTCGCAAGTAAATCTGAGAAGACATATTAGCACGACACACATGGGGATTAGACCAtatgaatgtgagatttgccacaaatcatttggatacacacaaaacttaaaaagacacataaatgtagtacataatcaaatcaaacccttcgaatgtgagatttgtcataaatcatttagaCAAAATCGATATCTCAGAAGACACTTGCATGATAGTAGAAAACGattcgagtgtgacatttgtcttaaatcattttcacttaAAGGTAATCTAAATAAACACATACGTTTAGTCCATGGTCAGAGCAAActttttgaatgtgacatttgtcacaagtcatttggagaaaaaagtactcTCAAAagtcacataaatgcagtacatgagtGTAGAAAACatttcgagtgtgatatttgtcataaatcattttcacatAAAGGTAATCTAAATATACACATAAGTTCAGTCCATgatcagagcaaaccctttcAATGCGACtattgtcacaaatcatttggatacaggGGTGACGTCAAGCGTCACgtgaatgcagtacataatcagagcaaacccttcgaatgtgagatttgtcacaaatcatttgtacGAAAAGATAATCTCAAAAcacatttaaattcaatacaCGATAATAagaaaccctttgaatgtgagatttgttacaaatcatttgtacGAAAAGATAATCTCAAAAcacatttaaattcaatacaCGATAATAagaaaccctttgaatgtgagatttgttacaaatcatttggatacaagggTGACCTCAAAAAGCACATAACGATAGTACATGAtggtagcaaacccttcgaatgtgagatttgtcacaagtcCTTTGGATACAAGAGTCACCTCAAATATCACacaaatacagtacatgaacggaataaacccttcgaatgtgaaatttgtctcCATAAGTTTGGATCCAAGGGTAACCTCAATGTTCATATCGATTCAGTACATGAACGGaataaacccttcgaatgtgaaatttgtctcCATAAGTTTGGATCCAAGGGTAACCTCAATGTTCCTATCGATTCAGCacatgatcggagcaaaccattcgagtgtgagatttgtcacaaatcatttgtacGAAAAGATAATctcaaaatacatttaaattcaatacaCGATAATAagaaaccctttgaatgtgagatttgttacaaatcatttggatacaagggTGACCTCAAAAAGCACATAACGATAGTACATGAtggtagcaaacccttcgaatgtgagatttgttacaaatcatttggatacaagagtCACCTCAAATATCACacaaatacagtacatgaacggaataaacccttcgaatgtgaaatttgtctcCATAAGTTTGGATCCAAGGGTAACCTTAATGTTCATATCGattcagtacatgatcggagcaaaccaTTCGAGTGTGAGATGTGTCAAAAATGTTTTGGATCTAACAGTtatctcaaaaagcacattAGGGCAGTACATGATagtagaaaacttttttag
Protein Sequence: MKEESNLSWTDAGDDYNFNSVVSSEIQNFRTFPDIKTSANYVNVAKPFHDEKIFVDFECKDVKPGPTSLSSAICKYEYQNCGSIVKKESENKTNGINEKIFVDFECRDVKSEPKSLSTTIDKSESRKFQPIVKIEKEDQSNDKNENIFIDFECKDVKSEVKPLSEITCKTEDQNLLPIVKIENQLQTNYLKEKDFVILRKKELNYDNDREIQEKSRIKMNKSEETKIIEKTTQIKLSFECQMCRKTYKSQVNLRRHISTTHMGIRPYECEICHKSFGYTQNLKRHINVVHNQIKPFECEICHKSFRQNRYLRRHLHDSRKRFECDICLKSFSLKGNLNKHIRLVHGQSKLFECDICHKSFGEKSTLKSHINAVHECRKHFECDICHKSFSHKGNLNIHISSVHDQSKPFQCDYCHKSFGYRGDVKRHVNAVHNQSKPFECEICHKSFVRKDNLKTHLNSIHDNKKPFECEICYKSFVRKDNLKTHLNSIHDNKKPFECEICYKSFGYKGDLKKHITIVHDGSKPFECEICHKSFGYKSHLKYHTNTVHERNKPFECEICLHKFGSKGNLNVHIDSVHERNKPFECEICLHKFGSKGNLNVPIDSAHDRSKPFECEICHKSFVRKDNLKIHLNSIHDNKKPFECEICYKSFGYKGDLKKHITIVHDGSKPFECEICYKSFGYKSHLKYHTNTVHERNKPFECEICLHKFGSKGNLNVHIDSVHDRSKPFECEMCQKCFGSNSYLKKHIRAVHDSRKLF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01485051;
90% Identity: iTF_01485051;
80% Identity: iTF_01485051;