Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: gtf3a
Assembly: GCA_000599845.3
Location: NW:276472-282337[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.045 0.73 9.9 0.8 1 23 617 639 617 639 0.97

2 16 2.1 35 4.6 0.1 1 19 645 663 645 666 0.80

3 16 0.00098 0.016 15.1 1.5 3 23 702 723 701 723 0.97

4 16 0.028 0.46 10.6 4.6 1 23 730 753 730 753 0.97

5 16 0.00014 0.0024 17.8 1.6 1 23 759 782 759 782 0.91

6 16 3.7 61 3.9 1.5 2 23 790 810 789 810 0.95

7 16 5.8e-06 9.4e-05 22.2 0.7 3 23 817 837 815 837 0.97

8 16 1.4e-06 2.4e-05 24.1 0.2 1 23 843 865 843 865 0.99

9 16 0.0026 0.043 13.8 2.5 2 23 877 899 876 899 0.95

10 16 0.069 1.1 9.3 1.2 1 23 905 928 905 928 0.96

11 16 0.077 1.3 9.2 1.5 3 23 952 973 951 973 0.94

12 16 0.0054 0.087 12.8 1.0 2 23 980 1002 979 1002 0.96

13 16 0.00069 0.011 15.6 0.6 2 23 1010 1031 1009 1031 0.96

14 16 0.041 0.67 10.0 1.1 1 23 1037 1060 1037 1060 0.94

15 16 2.4 38 4.5 6.0 2 23 1067 1088 1066 1088 0.96

16 16 0.013 0.22 11.6 2.7 1 23 1094 1116 1094 1116 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.045	0.73	9.9	0.8	1	23	617	639	617	639	0.97
2	16	2.1	35	4.6	0.1	1	19	645	663	645	666	0.80
3	16	0.00098	0.016	15.1	1.5	3	23	702	723	701	723	0.97
4	16	0.028	0.46	10.6	4.6	1	23	730	753	730	753	0.97
5	16	0.00014	0.0024	17.8	1.6	1	23	759	782	759	782	0.91
6	16	3.7	61	3.9	1.5	2	23	790	810	789	810	0.95
7	16	5.8e-06	9.4e-05	22.2	0.7	3	23	817	837	815	837	0.97
8	16	1.4e-06	2.4e-05	24.1	0.2	1	23	843	865	843	865	0.99
9	16	0.0026	0.043	13.8	2.5	2	23	877	899	876	899	0.95
10	16	0.069	1.1	9.3	1.2	1	23	905	928	905	928	0.96
11	16	0.077	1.3	9.2	1.5	3	23	952	973	951	973	0.94
12	16	0.0054	0.087	12.8	1.0	2	23	980	1002	979	1002	0.96
13	16	0.00069	0.011	15.6	0.6	2	23	1010	1031	1009	1031	0.96
14	16	0.041	0.67	10.0	1.1	1	23	1037	1060	1037	1060	0.94
15	16	2.4	38	4.5	6.0	2	23	1067	1088	1066	1088	0.96
16	16	0.013	0.22	11.6	2.7	1	23	1094	1116	1094	1116	0.98

Sequence Information

Coding Sequence: atgtctgaaaACAAATGTAAAGATGGAAAATCTGCAAAATTCTCCTCTCCAAGTAAAGTAAAGAAGAAAGCCATTATGTCACCAAaaaaagaaaattcaccaaaattatttaaatttcaaagtatTAAAGATGAATTGACGATAGAAGCAAATCAAGAAATTAGCAatcatgatatttttaaaagtgaatTGATTCAAAGTGCTGAAGAGCAATCTGATAATCATATTATGGATTCTAAAATGTCAAATGATCTAGAATATATTGgtttagaaattaaaaatttaaatgatctaaaaaaagttactcctcaaattaaattgtcatCATCAAAAATGTCATCGCCTTCTACTTTATCGTCATCGTACATATTGAATGATTCACAAAATAAACTACATAATTATTGCAGAACATGTGCTGAATTAAAATTTCCTTTGATAGATATATTTAGTGACGAAGGAACAGAAATGCAGCTAAACGAACAATTGCAATATTTTGAAGAAGTTGATGAATTTAGTTTATCTACAAAAATGTGTATCGAATGTATCAAGAATTTGGAAACAAGCTATAAGTTTTTGATGCAAATCAAAAATGCAGAAGTAAAACTTCAATCTATATGGGACTCTTGTCCAGAATCTCAAGTTAATGATTTGGAAGAAGATTATTCAGAGCATTACctaaatgaagaaaatgagaGCTCCGAATCTTTTTTTGACCAAACTGAAACATTTGAagaatcaaatgaaaatatttcatatgaTGAATGTGAACCAGATGATTCAAACGATATTGATCAAAGTTTACAGTCAAATTATGATAACAGTGAAACTGAAAATTGTGAGTATAACTTTGATGAAAGTCAAAGAACAGATGACAATGAAACTAACATAAAGAatgaatctgaaaaaatatttaataatgaaaaaagcagccctatgaaaaattcaattccaCCTTCACAAATATTTagcgatgtaaaaaaaaatgtagaaaaagaTGTGAGCTTTGCCAATGCAGATAAtggcaacgaaaaaaataaattaatattagctttaaaagaaatgaaaattccaaaattgaACTTTGATGACGTGATCAATGTAGAGGAGGGTGAAAACGGAATAATGTATGTCACTACTAAAGGATCGAAACCTAATGAGCTGCTTCTgttgaaagttaaaaaaatggaaaagttGACTAAAAAGGacgaaaagggaaaaaagtcCTCTAAAACTCATTCACAAAATAAAGCACAGCATCTAAGACCTTCAAATTTATcagaaaataatatcgacGATGAAATCGAGAAGTATAAAAGAAAACGCGTTGAAATTTTAGGAGAAGGTGCCGATATGATCGTCGAAGAGGAACCCAGTGAAGTCATAGACAACCGAGGTTTCGCCGGTAACTTGGGTGATACCGGATGTACAGAGAACACGAAAACCATCAAAGAAGAACTCGAAGATGCAGACGATCCGCTTTTTCAAGCCGCGAGTACATCCACAAGTTCATCCGCGAGTACGATCGCGGTATCAAAAAGTTCGAGCTCTATGGACGAGTTACGCGAAAGGTACAACGCAATTAGAAAGCAGAACGACTTTTTCGAGAGAGAATTATCGACCGAATTCAAGGACAGATTGAAGAGAATACTTCGACAGAAAAACGAATACATCGAGGACTTCGTGAAGTACTTGAATCAACGAAAAATCGTGGCGTCGAGATTGAAAACGGAAGACATCATACTGTTGTACGAGAAGAAGAACAACGTGAAAATCGACAGATCGGCGATCGAGGACGAAGGCCCCCCGGAGGAAGTCGCGGAGGAAAAATTGAACGAGGACAAGGAGGCGTACGACTGCGACTTCTGCTTCAGATTCTTCTACTCCGTGGACATGCTGCAGGAGCACGCGAAGATCCACGACGTGCGCATCCAGTACCTGTGCAGCGACTGCGGCGTCGAGTTCTCCACGGGCAAGGCGCGCCGCGAGCACAACGCCACCTGCGTGCAGAAGCTCATCTGCAAGGGCTGCGGCGAGCTGCAGGAGTCCAAGGGCAAGAAGCGCCAGCACGAGCAGAAGCACTGCGACGAGAGCTACGGCCAGCTGTGCGACACCTGCGGCGAGAAGTTCAAGCACCAGGGCACCCTCGACCAGCACATCAAGGTGAAGCACATGGATCTGGGCAAGGTGCACAAGTGCCCCGAGTGCTCCAAGGAGTTCACCTTCAAGACCAAGATGACGTTCCACATGAAGACGGTGCACACGACGGTGCGCGCCTTCCTCTGCGAGGACTGCGGCAAGGACTTCAAGAATCCGGCCAGTCTGCGCCATCACAAGGTGCGCAAGCACCTCGAGCCCAACAGCCGCAAGGAGTGCAAGATCTGCAAGAAGATGATACCGGCCTACGGCATGTCCAAGCACATGCACACCCACAAGGCATACACGATCGCCTGTCCGCGCTGCGACAAGATGTTCAAGAACACCTCGACCCTGAAGCAGCACCTGCGCATCCACGAGGACCAGCGACCGTACAAGTGCAACGAGTGCGGCGTGGGCTTCAACAGGCGCGACGGCCTCAGGCTGCACATGCGCGTCCACCAGAAGAGCAACTCGCGCGGTCTGCGCGAGTGCATCTGCCAGGTCTGCGGCGAGAAGTTCCCCAATCACTCGACCCTCGTCATACATCGCAATCGCACGCACAAGGACGGCCGCACGTTCACCTGCCACCTGTGCAATCGCTCGATGATCTCGCAGCGCTCGCTCGACTGGCATCTGTCCAGCATTCACAACGAGGTGCTGCCCGAGCGACCGGAGAAGGAGGAATCGGCGGTGGACACCGAGACGAAGCGCGTCGCCTGCCTCAAGTGCAACAAGACCTTCAAGACCGAGACGATACTGCGCACCCACGTGAAGAACAGCCACACGGAGAAGAAGCCGCAAAAGTGCCTGGACTGCGACGAGATCTTCACCTCGGACGTGCGCCTCAGGCACCACATGATGGTCCAGCACGAGCGCCTCGAGGGCACCCAGAAGTGTCCCTTCTGCCCCAAGCGCTTCGTCAATCAGCTTCGATTAAAGACCCACATGATCGCGCACTCGGAGGAGCGTCCCTTCGCCTGCGACCAGTGCGACTTCATGCTCAAGACGCGCATACAGCTGATCAAGCACAAGCAGAATCGGCACAGCGACGAGAGGCCGCTCCAGTGCCACTACTGCAGCTGGCGGTGCAAGCAGGTTAGCGCCCTGGTCTGTCACGAGCGCACTCACACGAACGAGCGCCCCTACAGCTGCAGCGTCTGCAAGCAGCGCTTCAAGTATCTCGGCGACAAGAACAAGCACGAGCGTAGGCACGAGAGCCTCGGCGGTAGCGGCTTCAAGCGCATCGCCATCGGCAAGAGCGGCaccggcggcggcagcggcgagaAGACCGAGGACCAGAGTGGCTTCGATTCGGACGCGGATGCGGCGGAGACGCACGACGAGAAGCAGGACGGCACCGTTTATAATTTGAACGACGAGATCGACACCTTCGACGAGTCCAGGATCATCAAATTCGAGACTGGCGAAATTGTGGCCGAGTCCGAGGCAACGTTTGAGCCTATGTACGTCGAGGAAGCTGAACATGACAATAACCATGGCACGGTCGTAGTTGGCTTCGAAGACGCCACAGTTTACACGGAAGAAGTTAGTACAGTACCCATGGAAACAGAGATAATAACGAACGATATGATAGATCAGCAGATTTTGCAACCAGGCACAGTCGTCCATCTTCAACAGCAGGACAGCAATGGAAAGATCCAGGTCATTCCCGTCATGCTGTCCTTGCCAGATCTAGGCGATCCCGGGGAAGTCAGTTTAACTGCCACGTCCATCATGTACAAAgaataa
Protein Sequence: MSENKCKDGKSAKFSSPSKVKKKAIMSPKKENSPKLFKFQSIKDELTIEANQEISNHDIFKSELIQSAEEQSDNHIMDSKMSNDLEYIGLEIKNLNDLKKVTPQIKLSSSKMSSPSTLSSSYILNDSQNKLHNYCRTCAELKFPLIDIFSDEGTEMQLNEQLQYFEEVDEFSLSTKMCIECIKNLETSYKFLMQIKNAEVKLQSIWDSCPESQVNDLEEDYSEHYLNEENESSESFFDQTETFEESNENISYDECEPDDSNDIDQSLQSNYDNSETENCEYNFDESQRTDDNETNIKNESEKIFNNEKSSPMKNSIPPSQIFSDVKKNVEKDVSFANADNGNEKNKLILALKEMKIPKLNFDDVINVEEGENGIMYVTTKGSKPNELLLLKVKKMEKLTKKDEKGKKSSKTHSQNKAQHLRPSNLSENNIDDEIEKYKRKRVEILGEGADMIVEEEPSEVIDNRGFAGNLGDTGCTENTKTIKEELEDADDPLFQAASTSTSSSASTIAVSKSSSSMDELRERYNAIRKQNDFFERELSTEFKDRLKRILRQKNEYIEDFVKYLNQRKIVASRLKTEDIILLYEKKNNVKIDRSAIEDEGPPEEVAEEKLNEDKEAYDCDFCFRFFYSVDMLQEHAKIHDVRIQYLCSDCGVEFSTGKARREHNATCVQKLICKGCGELQESKGKKRQHEQKHCDESYGQLCDTCGEKFKHQGTLDQHIKVKHMDLGKVHKCPECSKEFTFKTKMTFHMKTVHTTVRAFLCEDCGKDFKNPASLRHHKVRKHLEPNSRKECKICKKMIPAYGMSKHMHTHKAYTIACPRCDKMFKNTSTLKQHLRIHEDQRPYKCNECGVGFNRRDGLRLHMRVHQKSNSRGLRECICQVCGEKFPNHSTLVIHRNRTHKDGRTFTCHLCNRSMISQRSLDWHLSSIHNEVLPERPEKEESAVDTETKRVACLKCNKTFKTETILRTHVKNSHTEKKPQKCLDCDEIFTSDVRLRHHMMVQHERLEGTQKCPFCPKRFVNQLRLKTHMIAHSEERPFACDQCDFMLKTRIQLIKHKQNRHSDERPLQCHYCSWRCKQVSALVCHERTHTNERPYSCSVCKQRFKYLGDKNKHERRHESLGGSGFKRIAIGKSGTGGGSGEKTEDQSGFDSDADAAETHDEKQDGTVYNLNDEIDTFDESRIIKFETGEIVAESEATFEPMYVEEAEHDNNHGTVVVGFEDATVYTEEVSTVPMETEIITNDMIDQQILQPGTVVHLQQQDSNGKIQVIPVMLSLPDLGDPGEVSLTATSIMYKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01483118;
90% Identity: iTF_01484128; iTF_01481853; iTF_01483118;
80% Identity: -