Tpre004304.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:574983-577049[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.073 1.2 9.3 1.2 8 23 152 168 151 168 0.94 2 9 4.4e-05 0.00072 19.4 4.8 1 23 173 196 173 197 0.95 3 9 1.8e-05 0.00029 20.6 1.4 1 23 201 224 201 224 0.96 4 9 0.0023 0.038 14.0 2.8 1 23 229 252 229 252 0.95 5 9 5.9e-06 9.6e-05 22.1 2.9 1 23 257 280 257 280 0.95 6 9 4.8e-05 0.00078 19.3 0.2 1 23 285 308 285 308 0.95 7 9 1.7e-05 0.00027 20.7 0.6 1 23 313 336 313 336 0.94 8 9 4.5e-05 0.00073 19.4 0.6 1 23 341 364 341 364 0.95 9 9 2e-07 3.2e-06 26.8 2.6 2 23 370 392 370 392 0.97
Sequence Information
- Coding Sequence
- ATGAAATCTAGCGGTTTGTTCAATTGTgctgtcagAATTAAAGAAGAGCCTGCTGACAATGTAtcactttttgaaaatgattccGAAATGAATGACGAGGAACCTGATCTTAAAAACTTCCAACTCTTACCAATGTCgcaagaaaattcaaCCCATacaattcgaaaaaatgacgTAAATCATAGAAGTGGACTTTGTGACGAAGTGAAAATAGTTATTGAATGTGAAAACGTGAAGCCCAATATGGATTTATTAgtagttcaaaaaattgatgattattCTCGAAATCACTTGCAAGATATGAAATATAACGATGACAATGCAATTGAAAACTCAATTGAAATAGAAACcacagaaaaattaaaacaaaaatttgttgGTGATGCTgaaaaagaattgaatttgaatatccacaataaatttgttgaaaaaaataaaaaaagaagaattacaaaaaagtttaagaacgaacataacctcaaaacacacaTCGATACGGTTCATAATAAAACAACCCACATgtgtaaaatatgtaaaaagaaTTTCTCAACTATGGGTAATCTAAACAGGCATGTCAAATCATTACATCATGGTATTACACACTCATGTGATTTATGcggcaagaaattttcattcaaaggTAATGTCCAAGTCCACATCAATAAGGTGCACAATCGTATCACACACTCATGTGATTTATGTAGCAAGACATTTTCATGCAAAGGTAATCTCcaaatccacatcgattcagttcataatggtgtcactcatacatgtgacaattgcagaaagaaattcacaagcaagagtaatctcaaaatccacatagATTCGGTGCATAACGGTAAGAAACATACGTGTGACACGTGTGGAAAGAAGTACGgacgaaaaattaatctcgCGGCCCACATCGATGTAGCACACAATGGTATCactcatgcatgtgatatttgcggaaagaaatactcaattaaaaaaaatctcaaaaatcacattgaAGTCGCACATAATGGTGTTACTCACTCATGTAATTTATGTggcaagacattttcatgGAAAGGTAATCTCcaaatccacatcgattcggttcATAATGGTGTTACTCCTACATGTGATtattgcggaaagaaattcacaagcaagagtaatctcaaaattcacatacatacaatacaTAACAGTAACAAACATTCGTGTCGTGCGTGGAAAAAAGTACGGACGAAAAAGTAA
- Protein Sequence
- MKSSGLFNCAVRIKEEPADNVSLFENDSEMNDEEPDLKNFQLLPMSQENSTHTIRKNDVNHRSGLCDEVKIVIECENVKPNMDLLVVQKIDDYSRNHLQDMKYNDDNAIENSIEIETTEKLKQKFVGDAEKELNLNIHNKFVEKNKKRRITKKFKNEHNLKTHIDTVHNKTTHMCKICKKNFSTMGNLNRHVKSLHHGITHSCDLCGKKFSFKGNVQVHINKVHNRITHSCDLCSKTFSCKGNLQIHIDSVHNGVTHTCDNCRKKFTSKSNLKIHIDSVHNGKKHTCDTCGKKYGRKINLAAHIDVAHNGITHACDICGKKYSIKKNLKNHIEVAHNGVTHSCNLCGKTFSWKGNLQIHIDSVHNGVTPTCDYCGKKFTSKSNLKIHIHTIHNSNKHSCRAWKKVRTKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485017;
- 90% Identity
- iTF_01485017;
- 80% Identity
- iTF_01485017;