Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: -
Assembly: GCA_000599845.3
Location: NW:1534890-1542759[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 8.1 1.3e+02 2.8 0.1 5 23 127 147 126 147 0.87

2 11 1.6e-06 2.6e-05 23.9 2.5 1 23 158 181 158 181 0.98

3 11 8.2e-07 1.3e-05 24.8 0.7 1 23 187 210 187 210 0.97

4 11 2.6e-05 0.00042 20.1 0.2 1 23 216 239 216 239 0.96

5 11 0.00033 0.0054 16.6 2.3 1 23 245 268 245 268 0.97

6 11 1.1e-06 1.8e-05 24.4 3.4 1 23 274 297 274 297 0.98

7 11 1.1e-05 0.00018 21.3 2.1 1 23 303 326 303 326 0.97

8 11 4.7e-05 0.00077 19.3 1.2 1 21 332 352 332 353 0.96

9 11 0.44 7.2 6.8 1.7 9 23 354 369 352 369 0.92

10 11 1.5e-06 2.4e-05 24.0 0.9 1 23 398 421 398 421 0.98

11 11 0.029 0.48 10.5 2.4 1 14 427 440 427 441 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	8.1	1.3e+02	2.8	0.1	5	23	127	147	126	147	0.87
2	11	1.6e-06	2.6e-05	23.9	2.5	1	23	158	181	158	181	0.98
3	11	8.2e-07	1.3e-05	24.8	0.7	1	23	187	210	187	210	0.97
4	11	2.6e-05	0.00042	20.1	0.2	1	23	216	239	216	239	0.96
5	11	0.00033	0.0054	16.6	2.3	1	23	245	268	245	268	0.97
6	11	1.1e-06	1.8e-05	24.4	3.4	1	23	274	297	274	297	0.98
7	11	1.1e-05	0.00018	21.3	2.1	1	23	303	326	303	326	0.97
8	11	4.7e-05	0.00077	19.3	1.2	1	21	332	352	332	353	0.96
9	11	0.44	7.2	6.8	1.7	9	23	354	369	352	369	0.92
10	11	1.5e-06	2.4e-05	24.0	0.9	1	23	398	421	398	421	0.98
11	11	0.029	0.48	10.5	2.4	1	14	427	440	427	441	0.91

Sequence Information

Coding Sequence: ATGGAGAGCCGCAGCAACGTAGATAGagaaaagaaagtattGAATAATACTTGTCCAGATGAAGGCGacgattttaatttcaatccGACAGACTCTGTCGAAGCAGAAAACCGTGAAACAAGGTTATTGCCTGAATCATCGaggAAACACTGGAGTGAAACTGCGGAGATAACAGATGAATATATCAGgatagattttgagtgcagaGATGTTGAAAAGGAACTGCCGTCTCTATCAACGACCACCTGCAAGACCGAGAATCAACCTATTGTggaaaaagataaaagtaaaCTTAAGAATTTCGTGAATGAAAAACAAccaataattttgataaaaaaagggtttaattacgataaaaatgGTCAATTCGAAAGTAATCTTTGTCACACATCATTGGCATCGAATGAAGCCGTCAAGTCTCACTTGAAGGTCTCACCTCACATACAGGAGGTACATAATTCTAGTGCACCattcaaatgtaaaatttgccTAAAATCATTCCGACGAAAACgtacattgaaaattcatataaatacagtacacgaaggcAACAAACCCTTCAAGTGCGATATCtgtgaaaaatcgttttcatACAAGGCCAATCTTAAAAGTCACGTAGATACAGTACACTATCGTATGAAATCTTTTGAATGCGACATTTGtagaaaatcatttggacaaaaacaaagCCTCAGTGCTCACATTAAAGCAGTACACCTTCGTAGAAATCCCTTCAAATGTGATAAATGTCACAAAgcatttggatacaagaatTTACTCAAAGGGCACATAATTAAAATGCATGATTGGGGAGAACTTTtccaatgtaaaatttgtcataaatcatttagaTTAAAAAGTAGTCTCAGGGTTCACATAAaatcagtacataatcgtaatAAACCCTTTCAATGCGATATGTGTCACAAGTCATTTTCAATCAAGGGTTATCTCAGCAGACATATAAATTCAGTTCATAATAGTACGAAACCCTTCAAGTGCgaaatttgccacaaatcatttaaatcCAAGAATTATGTCAATGTTCATATTAATGCCTCATTTGGCCGCAAGCATCATCTTCAAAGTCATATAATAACAGTACATGATGATAGCGCTATTAACAAATCAGTTGAACTAGAAAGTACTCGTGAAGCTGAAATTAATACAGCAAGTAATTATGGAAAATTCTTccaatgtgacatttgtcgcAAGTCATTTACAATCAAGGGTAACCTCTACCGTCATATAAATACGGttcataataatacaaaaccCTTCAAGTGCGAAATTTGCAACAAATCATTTAAATACAAGGGATATGGTTACTTCAGGCAacacttttttaataagaaaaaattgctaaCGCCTAACTGCATGTACTGTGGACACGAACGAGACGACGCTGAACATACGTTTTTCCACTGTGTCAAGTGGACAGCTCGGCGTCAGGAACTAGAGTCCGTTTACGGAGAAATCACGCCAGACAACATCATCGGCGTGATGCTCCGGGACAAGGAAACATGGACAACTTTTGTGGTCTTCATCGAAACTGTTCTTAAGCGTAAGAAAGCTGATGGATGTCTGAGGGATAAATGA
Protein Sequence: MESRSNVDREKKVLNNTCPDEGDDFNFNPTDSVEAENRETRLLPESSRKHWSETAEITDEYIRIDFECRDVEKELPSLSTTTCKTENQPIVEKDKSKLKNFVNEKQPIILIKKGFNYDKNGQFESNLCHTSLASNEAVKSHLKVSPHIQEVHNSSAPFKCKICLKSFRRKRTLKIHINTVHEGNKPFKCDICEKSFSYKANLKSHVDTVHYRMKSFECDICRKSFGQKQSLSAHIKAVHLRRNPFKCDKCHKAFGYKNLLKGHIIKMHDWGELFQCKICHKSFRLKSSLRVHIKSVHNRNKPFQCDMCHKSFSIKGYLSRHINSVHNSTKPFKCEICHKSFKSKNYVNVHINASFGRKHHLQSHIITVHDDSAINKSVELESTREAEINTASNYGKFFQCDICRKSFTIKGNLYRHINTVHNNTKPFKCEICNKSFKYKGYGYFRQHFFNKKKLLTPNCMYCGHERDDAEHTFFHCVKWTARRQELESVYGEITPDNIIGVMLRDKETWTTFVVFIETVLKRKKADGCLRDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01485025;
90% Identity: iTF_01485025;
80% Identity: iTF_01485025;