Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: -
Assembly: GCA_000599845.3
Location: NW:274862-277819[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 2.3e-06 3.7e-05 23.4 1.4 2 23 250 272 249 272 0.94

2 10 3.3e-07 5.4e-06 26.1 4.0 1 23 278 301 278 301 0.97

3 10 8.8e-07 1.4e-05 24.7 2.5 1 23 307 330 307 330 0.96

4 10 2.4e-06 3.9e-05 23.4 3.5 1 23 336 359 336 359 0.98

5 10 5.6e-06 9.1e-05 22.2 0.2 1 23 365 388 365 388 0.96

6 10 0.0048 0.079 13.0 3.3 1 22 394 415 394 417 0.87

7 10 5.6e-05 0.00091 19.1 0.7 1 23 423 446 423 446 0.96

8 10 0.0001 0.0017 18.2 2.0 1 23 452 475 452 475 0.94

9 10 0.001 0.017 15.1 1.8 1 23 481 504 481 504 0.97

10 10 4.7e-05 0.00077 19.3 2.0 1 23 509 532 509 532 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	2.3e-06	3.7e-05	23.4	1.4	2	23	250	272	249	272	0.94
2	10	3.3e-07	5.4e-06	26.1	4.0	1	23	278	301	278	301	0.97
3	10	8.8e-07	1.4e-05	24.7	2.5	1	23	307	330	307	330	0.96
4	10	2.4e-06	3.9e-05	23.4	3.5	1	23	336	359	336	359	0.98
5	10	5.6e-06	9.1e-05	22.2	0.2	1	23	365	388	365	388	0.96
6	10	0.0048	0.079	13.0	3.3	1	22	394	415	394	417	0.87
7	10	5.6e-05	0.00091	19.1	0.7	1	23	423	446	423	446	0.96
8	10	0.0001	0.0017	18.2	2.0	1	23	452	475	452	475	0.94
9	10	0.001	0.017	15.1	1.8	1	23	481	504	481	504	0.97
10	10	4.7e-05	0.00077	19.3	2.0	1	23	509	532	509	532	0.95

Sequence Information

Coding Sequence: ATGGAAAGCAGAAAGGATTTAGTTAGCATTAAAGAGGAGCCTCGTGACAATTGGGAAGATGTTACCAACGAGAGTGTCGATCCGGGGGTCTTGGTCAAAACCGAAAACTCTGATGAATCATCGgcaAATCCCACCAATGACTGTATTTCGTCGCAGCAGAAGGAAGATGAGGATATTCTGATAGATTGCGAGAGCGTATTGGTAAAACAGGAACATAAGCCCTCATTGACGACCATCTGCCAACCTACTGTAAAGGAAGAAGATCCAGCAAATGACTCGAGTGGAAAAAGgcttacaattttcaataaaaaaggatCCGATTGCGATAATAACAGTCAATTTACGATGGGAGAAGAATCGAGTTTAACAAGACAAATAGAAACGACGAATGAGGACGATGGATCACATGAATTAGAACTTTGCAAAACCGAAAACTCTGATGAACCATCGACGAATGAATCATCGgcaaatccCACCAATGACTGTATTTCGTCGCAGCAGAAGGAAGATGAGGATATTCTGATAGATTGCGAGAGCGTATTGGTAAAACAGGAACATAAGCCCTCATTGACGACCATCTGCCAACCTACtgtaaaggaagaaaatcCAGCAAATGACTCGAATGGAAAGAagcttacaattttaattaaaaaagaattcaattaCGATAGTAATCGTAAATTTACCAGAGAAGAAGCGACTTCAGCCCGACAAATGAAAACGACACACAAGGGCAGTAGACCacttgaatgtgaaatttgtcacaaatcgtttAGATACCCATCTACTCTTAAAAGGCACGTGAATcaagtacatgataaaaacaAACCCTTCCAGTGTAACatatgtcacaaatcattttcatacaaGAGTGATCTAAATAGACATACAAGCACAGTACacgatcgtagcaaaccttttgagtgtgagatttgtcacaaatcgtttAGATACCTATCTAATCTTAAAAGGCACGTGAATcaagtacatgataaaaacaAACCCTTCCAGTGtaacatttgtcacaaatcattttcatacaaGGGTGTTCTAAATAAACATacaaggacagtacacgatcgtagcaaaccttttgagtgtgagatttgtcacaaagcatttggactaaaaagtAACCTTGAAATACATATAAgggcagtacataatcagagcaaaccttttgagtgtgagatttgtcacaaatcatttggacaaaaacacaGCCTCAAATTTCACACGAGTGCAGTACATTTGCGGAggaaaccctttgagtgtgacatttgtcaaaaatcattttcagtaaaaagTAGCCtcacatttcacataaattcagtacataatcagagcaaaccctttgagtgtgatacttgtcacaaatcatttaaatacaaaatcaGCTTCGAAATTCATATGAGTGCAGTACATATGAGTAGGAAACCTTTTGAGTGTGCTATTTGTCAcgaatcatttggatacaagagtGTACTCAAATATCACTTAAAATCAACTCATGAAcggagaaaatttgaatgtaagaCTTGTCACAAGTCATTGAGTACCAAGAAAAGTCTCGAAAATCACATTAATGCAGTACATATGGAAAGCAAATCTTAG
Protein Sequence: MESRKDLVSIKEEPRDNWEDVTNESVDPGVLVKTENSDESSANPTNDCISSQQKEDEDILIDCESVLVKQEHKPSLTTICQPTVKEEDPANDSSGKRLTIFNKKGSDCDNNSQFTMGEESSLTRQIETTNEDDGSHELELCKTENSDEPSTNESSANPTNDCISSQQKEDEDILIDCESVLVKQEHKPSLTTICQPTVKEENPANDSNGKKLTILIKKEFNYDSNRKFTREEATSARQMKTTHKGSRPLECEICHKSFRYPSTLKRHVNQVHDKNKPFQCNICHKSFSYKSDLNRHTSTVHDRSKPFECEICHKSFRYLSNLKRHVNQVHDKNKPFQCNICHKSFSYKGVLNKHTRTVHDRSKPFECEICHKAFGLKSNLEIHIRAVHNQSKPFECEICHKSFGQKHSLKFHTSAVHLRRKPFECDICQKSFSVKSSLTFHINSVHNQSKPFECDTCHKSFKYKISFEIHMSAVHMSRKPFECAICHESFGYKSVLKYHLKSTHERRKFECKTCHKSLSTKKSLENHINAVHMESKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01484954;
90% Identity: iTF_01484954;
80% Identity: iTF_01484954;