Tpre002415.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:274862-277819[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.01 0.77 9.3 0.9 18 43 250 272 245 273 0.92 2 10 0.0022 0.16 11.5 5.3 2 40 263 298 262 302 0.79 3 10 0.0031 0.23 11.0 3.8 12 43 302 330 295 331 0.84 4 10 0.0018 0.14 11.7 5.5 1 31 320 349 320 360 0.84 5 10 0.052 3.8 7.1 1.9 6 44 354 389 350 389 0.85 6 10 2.6 1.9e+02 1.6 4.6 6 31 383 408 383 421 0.71 7 10 0.016 1.2 8.7 1.1 6 44 412 447 407 447 0.87 8 10 3.2 2.4e+02 1.3 2.7 12 29 447 464 440 475 0.78 9 10 0.0094 0.7 9.5 1.5 6 43 470 504 467 505 0.88 10 10 0.093 6.9 6.3 7.2 3 43 495 532 494 533 0.86
Sequence Information
- Coding Sequence
- ATGGAAAGCAGAAAGGATTTAGTTAGCATTAAAGAGGAGCCTCGTGACAATTGGGAAGATGTTACCAACGAGAGTGTCGATCCGGGGGTCTTGGTCAAAACCGAAAACTCTGATGAATCATCGgcaAATCCCACCAATGACTGTATTTCGTCGCAGCAGAAGGAAGATGAGGATATTCTGATAGATTGCGAGAGCGTATTGGTAAAACAGGAACATAAGCCCTCATTGACGACCATCTGCCAACCTACTGTAAAGGAAGAAGATCCAGCAAATGACTCGAGTGGAAAAAGgcttacaattttcaataaaaaaggatCCGATTGCGATAATAACAGTCAATTTACGATGGGAGAAGAATCGAGTTTAACAAGACAAATAGAAACGACGAATGAGGACGATGGATCACATGAATTAGAACTTTGCAAAACCGAAAACTCTGATGAACCATCGACGAATGAATCATCGgcaaatccCACCAATGACTGTATTTCGTCGCAGCAGAAGGAAGATGAGGATATTCTGATAGATTGCGAGAGCGTATTGGTAAAACAGGAACATAAGCCCTCATTGACGACCATCTGCCAACCTACtgtaaaggaagaaaatcCAGCAAATGACTCGAATGGAAAGAagcttacaattttaattaaaaaagaattcaattaCGATAGTAATCGTAAATTTACCAGAGAAGAAGCGACTTCAGCCCGACAAATGAAAACGACACACAAGGGCAGTAGACCacttgaatgtgaaatttgtcacaaatcgtttAGATACCCATCTACTCTTAAAAGGCACGTGAATcaagtacatgataaaaacaAACCCTTCCAGTGTAACatatgtcacaaatcattttcatacaaGAGTGATCTAAATAGACATACAAGCACAGTACacgatcgtagcaaaccttttgagtgtgagatttgtcacaaatcgtttAGATACCTATCTAATCTTAAAAGGCACGTGAATcaagtacatgataaaaacaAACCCTTCCAGTGtaacatttgtcacaaatcattttcatacaaGGGTGTTCTAAATAAACATacaaggacagtacacgatcgtagcaaaccttttgagtgtgagatttgtcacaaagcatttggactaaaaagtAACCTTGAAATACATATAAgggcagtacataatcagagcaaaccttttgagtgtgagatttgtcacaaatcatttggacaaaaacacaGCCTCAAATTTCACACGAGTGCAGTACATTTGCGGAggaaaccctttgagtgtgacatttgtcaaaaatcattttcagtaaaaagTAGCCtcacatttcacataaattcagtacataatcagagcaaaccctttgagtgtgatacttgtcacaaatcatttaaatacaaaatcaGCTTCGAAATTCATATGAGTGCAGTACATATGAGTAGGAAACCTTTTGAGTGTGCTATTTGTCAcgaatcatttggatacaagagtGTACTCAAATATCACTTAAAATCAACTCATGAAcggagaaaatttgaatgtaagaCTTGTCACAAGTCATTGAGTACCAAGAAAAGTCTCGAAAATCACATTAATGCAGTACATATGGAAAGCAAATCTTAG
- Protein Sequence
- MESRKDLVSIKEEPRDNWEDVTNESVDPGVLVKTENSDESSANPTNDCISSQQKEDEDILIDCESVLVKQEHKPSLTTICQPTVKEEDPANDSSGKRLTIFNKKGSDCDNNSQFTMGEESSLTRQIETTNEDDGSHELELCKTENSDEPSTNESSANPTNDCISSQQKEDEDILIDCESVLVKQEHKPSLTTICQPTVKEENPANDSNGKKLTILIKKEFNYDSNRKFTREEATSARQMKTTHKGSRPLECEICHKSFRYPSTLKRHVNQVHDKNKPFQCNICHKSFSYKSDLNRHTSTVHDRSKPFECEICHKSFRYLSNLKRHVNQVHDKNKPFQCNICHKSFSYKGVLNKHTRTVHDRSKPFECEICHKAFGLKSNLEIHIRAVHNQSKPFECEICHKSFGQKHSLKFHTSAVHLRRKPFECDICQKSFSVKSSLTFHINSVHNQSKPFECDTCHKSFKYKISFEIHMSAVHMSRKPFECAICHESFGYKSVLKYHLKSTHERRKFECKTCHKSLSTKKSLENHINAVHMESKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485298;
- 90% Identity
- iTF_01485298;
- 80% Identity
- iTF_01485298;