Tpre010721.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:1055988-1058166[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.6 75 3.6 0.3 8 21 149 162 149 163 0.86 2 12 1e-06 1.6e-05 24.6 0.3 1 23 170 193 170 193 0.92 3 12 4.2e-05 0.00068 19.5 0.7 2 23 199 221 199 221 0.95 4 12 5.9e-06 9.6e-05 22.1 0.4 1 23 226 249 226 249 0.93 5 12 6.8e-05 0.0011 18.8 0.5 2 23 255 277 255 277 0.92 6 12 7e-06 0.00011 21.9 0.3 1 23 282 305 282 305 0.91 7 12 6.8e-05 0.0011 18.8 0.5 2 23 311 333 311 333 0.92 8 12 0.0014 0.023 14.7 0.6 1 23 338 360 338 360 0.90 9 12 0.00013 0.0022 17.9 0.7 2 23 366 388 366 388 0.96 10 12 3.4e-06 5.5e-05 22.9 0.3 1 23 393 416 393 416 0.92 11 12 3.2e-06 5.2e-05 23.0 1.2 1 23 421 444 421 444 0.91 12 12 1.1e-05 0.00018 21.2 1.1 2 23 450 472 450 472 0.95
Sequence Information
- Coding Sequence
- ATGGAGTCGAGTGATACACTTGATTGTGccgtcagAGTCAAGGAGGAGCCTAGCGATATGTCGTTCACTGAAAATTATTGGGACACGGTCGACGAGAAACCCGatctaaaaaatttccaaCTGTTACCATTACTGGAAGACAATTCGATCATTCGAAAATGTGACGAAAATCATGAAAGTAAACTGAACAACGAAGTGAAGATAGTTTTTGAATGCGAAGATGTAAAGCCCAATATAGATTTGTCAATAGTTAAACAAATTGACGACTATTCTCAAAATCATTTGCAATATATGAATTACAGtgataatgataaaactcaAGACACGATTAAAATAGAACCTGCGGTGGAAGTGGAAAGAGACACTTTTGGCAACGatgcagaaaaattgaatttgaattacaATTGTGAacgcagtgaaaaaaataacatgaaaaGAATCGCAAAAAAGGTTAAAAACAaccataacctcaaaatccacatcaaTTCAGTGAATAATGGTATCGATCATGTATGCGGtatatgtggaaaaaaattcacacaaaaaggaaatctcaaaattcacattgatgcgattcataatggtatggcaccAACATGcgaaatatgcggaaagaaatttcaaacgaagaATAAACTTAAGattcacatcgattcagtacataatggcGTTAAACATGTGTGTAgtatatgtggaaagacatacgcacaaaaaaaagatctcaaaatccacatcgaagcgatgcataatggtacggcacctacttgcgaaatatgcggaaagaaatttcaaacgaaaactaaactcaagattcacatcgatggagtacataatggtgttaaacatgcgtgtggtgtgtgtggaaagacattcactcaaaaaggagatctcaaaatgcacattgatgcgatgcataatggtatggcaaATACTTGcgaaatatgcggaaagaaatttcaaacgaaaactaaactcaaaattcacatcgatggagtacataatggtgttaaacatgcgtgtggtatgtgtggaaagacattctcaaAAGGATATCTCAAAATGCACAttgatgcgatgcataatggtatggcaaATACATGCAAAGTATGTGGTAATACATTCGCATTCAAGCGTGGTCTTAAAAGACACAtggattcagtgcataatggtgttaaacatgagTGTGTtatatgtggaaagacattcacacaaaaaggaacgctcaaaattcacatcgatgcagtTCATAATGTTGTTAAGCATGCGTGTGgtatatgtggaaagacattcacacaaaaaggacatctcaaaatgcacatcgatgcgatgcataaaggTACGGCACCTACATGCaaaatatgcggaaagaaatttcaaaggAAGGATAAACTCAAGattcacatcgattcagttCATAATGATATTACCCATGAATGA
- Protein Sequence
- MESSDTLDCAVRVKEEPSDMSFTENYWDTVDEKPDLKNFQLLPLLEDNSIIRKCDENHESKLNNEVKIVFECEDVKPNIDLSIVKQIDDYSQNHLQYMNYSDNDKTQDTIKIEPAVEVERDTFGNDAEKLNLNYNCERSEKNNMKRIAKKVKNNHNLKIHINSVNNGIDHVCGICGKKFTQKGNLKIHIDAIHNGMAPTCEICGKKFQTKNKLKIHIDSVHNGVKHVCSICGKTYAQKKDLKIHIEAMHNGTAPTCEICGKKFQTKTKLKIHIDGVHNGVKHACGVCGKTFTQKGDLKMHIDAMHNGMANTCEICGKKFQTKTKLKIHIDGVHNGVKHACGMCGKTFSKGYLKMHIDAMHNGMANTCKVCGNTFAFKRGLKRHMDSVHNGVKHECVICGKTFTQKGTLKIHIDAVHNVVKHACGICGKTFTQKGHLKMHIDAMHKGTAPTCKICGKKFQRKDKLKIHIDSVHNDITHE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01484976;
- 90% Identity
- iTF_01484976;
- 80% Identity
- iTF_01484976;