Tpre010721.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:1055988-1058166[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.037 2.8 7.6 0.8 18 39 171 189 169 194 0.78 2 11 0.094 7 6.3 1.6 18 44 199 222 188 222 0.84 3 11 0.012 0.89 9.1 0.9 17 44 226 250 223 250 0.88 4 11 0.17 12 5.4 0.9 18 41 255 275 251 282 0.76 5 11 0.4 30 4.2 0.4 18 43 283 305 279 306 0.73 6 11 0.29 22 4.7 3.0 17 41 310 331 299 338 0.76 7 11 0.3 22 4.6 0.9 18 43 339 360 334 361 0.75 8 11 0.0022 0.16 11.5 1.4 16 44 364 389 352 389 0.88 9 11 0.073 5.5 6.6 0.8 18 38 394 411 391 422 0.74 10 11 0.16 12 5.5 1.6 18 43 422 444 419 445 0.75 11 11 0.013 0.97 9.0 3.2 13 43 445 472 435 473 0.79
Sequence Information
- Coding Sequence
- ATGGAGTCGAGTGATACACTTGATTGTGccgtcagAGTCAAGGAGGAGCCTAGCGATATGTCGTTCACTGAAAATTATTGGGACACGGTCGACGAGAAACCCGatctaaaaaatttccaaCTGTTACCATTACTGGAAGACAATTCGATCATTCGAAAATGTGACGAAAATCATGAAAGTAAACTGAACAACGAAGTGAAGATAGTTTTTGAATGCGAAGATGTAAAGCCCAATATAGATTTGTCAATAGTTAAACAAATTGACGACTATTCTCAAAATCATTTGCAATATATGAATTACAGtgataatgataaaactcaAGACACGATTAAAATAGAACCTGCGGTGGAAGTGGAAAGAGACACTTTTGGCAACGatgcagaaaaattgaatttgaattacaATTGTGAacgcagtgaaaaaaataacatgaaaaGAATCGCAAAAAAGGTTAAAAACAaccataacctcaaaatccacatcaaTTCAGTGAATAATGGTATCGATCATGTATGCGGtatatgtggaaaaaaattcacacaaaaaggaaatctcaaaattcacattgatgcgattcataatggtatggcaccAACATGcgaaatatgcggaaagaaatttcaaacgaagaATAAACTTAAGattcacatcgattcagtacataatggcGTTAAACATGTGTGTAgtatatgtggaaagacatacgcacaaaaaaaagatctcaaaatccacatcgaagcgatgcataatggtacggcacctacttgcgaaatatgcggaaagaaatttcaaacgaaaactaaactcaagattcacatcgatggagtacataatggtgttaaacatgcgtgtggtgtgtgtggaaagacattcactcaaaaaggagatctcaaaatgcacattgatgcgatgcataatggtatggcaaATACTTGcgaaatatgcggaaagaaatttcaaacgaaaactaaactcaaaattcacatcgatggagtacataatggtgttaaacatgcgtgtggtatgtgtggaaagacattctcaaAAGGATATCTCAAAATGCACAttgatgcgatgcataatggtatggcaaATACATGCAAAGTATGTGGTAATACATTCGCATTCAAGCGTGGTCTTAAAAGACACAtggattcagtgcataatggtgttaaacatgagTGTGTtatatgtggaaagacattcacacaaaaaggaacgctcaaaattcacatcgatgcagtTCATAATGTTGTTAAGCATGCGTGTGgtatatgtggaaagacattcacacaaaaaggacatctcaaaatgcacatcgatgcgatgcataaaggTACGGCACCTACATGCaaaatatgcggaaagaaatttcaaaggAAGGATAAACTCAAGattcacatcgattcagttCATAATGATATTACCCATGAATGA
- Protein Sequence
- MESSDTLDCAVRVKEEPSDMSFTENYWDTVDEKPDLKNFQLLPLLEDNSIIRKCDENHESKLNNEVKIVFECEDVKPNIDLSIVKQIDDYSQNHLQYMNYSDNDKTQDTIKIEPAVEVERDTFGNDAEKLNLNYNCERSEKNNMKRIAKKVKNNHNLKIHINSVNNGIDHVCGICGKKFTQKGNLKIHIDAIHNGMAPTCEICGKKFQTKNKLKIHIDSVHNGVKHVCSICGKTYAQKKDLKIHIEAMHNGTAPTCEICGKKFQTKTKLKIHIDGVHNGVKHACGVCGKTFTQKGDLKMHIDAMHNGMANTCEICGKKFQTKTKLKIHIDGVHNGVKHACGMCGKTFSKGYLKMHIDAMHNGMANTCKVCGNTFAFKRGLKRHMDSVHNGVKHECVICGKTFTQKGTLKIHIDAVHNVVKHACGICGKTFTQKGHLKMHIDAMHKGTAPTCKICGKKFQRKDKLKIHIDSVHNDITHE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485209;
- 90% Identity
- iTF_01485209;
- 80% Identity
- iTF_01485209;