Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: -
Assembly: GCA_000599845.3
Location: NW:691696-693621[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.069 1.1 9.3 0.4 5 20 182 197 181 198 0.93

2 12 2.3e-05 0.00038 20.3 0.6 1 23 206 229 206 229 0.94

3 12 1.1e-05 0.00018 21.2 1.6 1 23 234 257 234 258 0.95

4 12 2.4e-05 0.0004 20.2 1.8 1 23 262 285 262 285 0.96

5 12 1.9e-06 3.1e-05 23.7 0.2 1 23 290 313 290 313 0.96

6 12 0.012 0.2 11.7 2.2 1 23 318 341 318 341 0.96

7 12 0.00022 0.0036 17.2 0.4 1 23 346 369 346 369 0.95

8 12 7.8e-07 1.3e-05 24.9 0.7 1 23 374 397 374 397 0.94

9 12 0.00014 0.0023 17.8 4.2 1 23 402 425 402 425 0.96

10 12 1.3e-06 2.1e-05 24.2 2.1 1 23 430 453 430 453 0.94

11 12 4e-06 6.5e-05 22.7 0.9 1 23 458 481 458 481 0.91

12 12 5.2e-07 8.4e-06 25.5 1.0 1 23 486 509 486 509 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.069	1.1	9.3	0.4	5	20	182	197	181	198	0.93
2	12	2.3e-05	0.00038	20.3	0.6	1	23	206	229	206	229	0.94
3	12	1.1e-05	0.00018	21.2	1.6	1	23	234	257	234	258	0.95
4	12	2.4e-05	0.0004	20.2	1.8	1	23	262	285	262	285	0.96
5	12	1.9e-06	3.1e-05	23.7	0.2	1	23	290	313	290	313	0.96
6	12	0.012	0.2	11.7	2.2	1	23	318	341	318	341	0.96
7	12	0.00022	0.0036	17.2	0.4	1	23	346	369	346	369	0.95
8	12	7.8e-07	1.3e-05	24.9	0.7	1	23	374	397	374	397	0.94
9	12	0.00014	0.0023	17.8	4.2	1	23	402	425	402	425	0.96
10	12	1.3e-06	2.1e-05	24.2	2.1	1	23	430	453	430	453	0.94
11	12	4e-06	6.5e-05	22.7	0.9	1	23	458	481	458	481	0.91
12	12	5.2e-07	8.4e-06	25.5	1.0	1	23	486	509	486	509	0.95

Sequence Information

Coding Sequence: ATGAACTTCCAAACAAATAAGATGGAATCGAGCGAAATGTTTAACTGTGtagtcagaGTAAAAAGTGAACCTATTGATGCGTCATATGCTGAGAATGAGTATAATAGTATTGACGAGACCCTCGATgataaaaactttgaattttccaGATGTCCACAAGAATACCCAATTCACGCGCTTCGGAAATCTGACGAAAGTCACGAAGGTGAACTTGACGAGTTGGCGATCGAGTTGGAATGTAAAGAACAGAAGCCCAAATTTGATTTACTAGCGGTTACGAAGATTGAAAATTCGTTTCAAAATCACTCGCAGCATATGGAAGATGGAAATGGTCATCGAGTTCGAGGTGAAatcaaaatagaaaatttggGAGCAATGAAAAAGGAATCATTCGTGGAAGACGCAAGCCAATTGAATGTTGAATTAGACCGTGGACTCGGTGAGCCAAATGAAACAAGCCGTGTTACAAACAAGTTGAGCTATAAACGTAGCCTAAAAATGCGCATCGGAACggcgcacaatggtgtcaTCCACACTCGTGATCTTTGTAAAAAGACTTGCGGAACTGAGAGTCATCTCCAAAAACACATTGTTGCGGTACAGAATAAGATCCCTCACGCATGTAGTATTTGCGGAAACAAATTCGCACGAAAGAGTACtctgaaaaatcatattgaCGTAGTGCATAATGGAGTCAgatatgcatgtgatatttgcggaaagaaatatTCTCAAAAGATTCATCTAAGAGAACACATCGATTCTGCGCATCATAAAATCGTACATGAATGTGATCgttgtggaaagaaattttcaatcaagaATAATCTAAAAAGACACGTCGATACCGCGCACAATGGCCTTAGAtacgcatgtgatatttgcgaaaagaaatacTCACAGAAGGGTGATCTCAAGAGACACATGGATGTGGCGCACAATGGTGTTAGATATGAATGTAATAGTTGCACAAAGAAATACTTGCATAAGAGTGTTCTCAAGAGACACATGGATGTGGCGCACAATGGTGTTAGACAtgtatgtgatatttgcgaaaagaCCTACACAACTAAGAGTATTCTCCAAAATCACATTGATGTGGCGCACAATGGTGTtagacatgcatgtgatatttgcgaaaagaGTTTCTCAGATAAGAGTTatctcaagaaacacatcgaTGTGGCGCACAATGGTGTCGCTCATACTTGTGATCTTTGTGGGAAGAAATTTTCAGAGAAATGTAGTCTTAAAAACCACATCGAGTCGCTACATAATGGTATGACACATGCATGTAATacatgccaaaagacattctcagacaAAAGTAATCTCAAGAATCACATCGATTCTGTGCACAAGCGAGTcagacatgcatgtgatacATGCCAAAAGATATTCTCAGACAAAAGTAATCTCAAGAAGCACATCGATGCTGTGCACAGGCGAGTCAGACATGCATGTGATCTTTGTGGGAAGACATTTTCACTCAAGAGTAATCTCAAGAGGCACATCGAAATGGTGCATCGCATGTGA
Protein Sequence: MNFQTNKMESSEMFNCVVRVKSEPIDASYAENEYNSIDETLDDKNFEFSRCPQEYPIHALRKSDESHEGELDELAIELECKEQKPKFDLLAVTKIENSFQNHSQHMEDGNGHRVRGEIKIENLGAMKKESFVEDASQLNVELDRGLGEPNETSRVTNKLSYKRSLKMRIGTAHNGVIHTRDLCKKTCGTESHLQKHIVAVQNKIPHACSICGNKFARKSTLKNHIDVVHNGVRYACDICGKKYSQKIHLREHIDSAHHKIVHECDRCGKKFSIKNNLKRHVDTAHNGLRYACDICEKKYSQKGDLKRHMDVAHNGVRYECNSCTKKYLHKSVLKRHMDVAHNGVRHVCDICEKTYTTKSILQNHIDVAHNGVRHACDICEKSFSDKSYLKKHIDVAHNGVAHTCDLCGKKFSEKCSLKNHIESLHNGMTHACNTCQKTFSDKSNLKNHIDSVHKRVRHACDTCQKIFSDKSNLKKHIDAVHRRVRHACDLCGKTFSLKSNLKRHIEMVHRM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01484883;
90% Identity: iTF_01484883;
80% Identity: iTF_01484883;