Tpre012325.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:691696-693621[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0089 0.66 9.5 1.5 19 43 208 229 191 230 0.87 2 11 0.027 2 8.0 1.4 19 43 236 257 233 258 0.87 3 11 0.00063 0.047 13.2 1.8 18 44 263 286 258 286 0.92 4 11 0.0084 0.62 9.6 0.2 19 44 292 314 289 314 0.87 5 11 0.27 20 4.8 2.4 18 44 319 342 316 342 0.91 6 11 0.055 4.1 7.0 0.6 18 43 347 369 344 370 0.83 7 11 0.14 10 5.7 0.4 19 44 376 398 373 398 0.90 8 11 0.14 10 5.7 2.6 18 43 403 425 400 426 0.85 9 11 0.00066 0.049 13.1 1.6 19 44 432 454 429 454 0.95 10 11 0.008 0.59 9.7 0.2 19 44 460 482 456 487 0.89 11 11 0.00045 0.033 13.7 0.9 19 44 488 510 482 510 0.92
Sequence Information
- Coding Sequence
- ATGAACTTCCAAACAAATAAGATGGAATCGAGCGAAATGTTTAACTGTGtagtcagaGTAAAAAGTGAACCTATTGATGCGTCATATGCTGAGAATGAGTATAATAGTATTGACGAGACCCTCGATgataaaaactttgaattttccaGATGTCCACAAGAATACCCAATTCACGCGCTTCGGAAATCTGACGAAAGTCACGAAGGTGAACTTGACGAGTTGGCGATCGAGTTGGAATGTAAAGAACAGAAGCCCAAATTTGATTTACTAGCGGTTACGAAGATTGAAAATTCGTTTCAAAATCACTCGCAGCATATGGAAGATGGAAATGGTCATCGAGTTCGAGGTGAAatcaaaatagaaaatttggGAGCAATGAAAAAGGAATCATTCGTGGAAGACGCAAGCCAATTGAATGTTGAATTAGACCGTGGACTCGGTGAGCCAAATGAAACAAGCCGTGTTACAAACAAGTTGAGCTATAAACGTAGCCTAAAAATGCGCATCGGAACggcgcacaatggtgtcaTCCACACTCGTGATCTTTGTAAAAAGACTTGCGGAACTGAGAGTCATCTCCAAAAACACATTGTTGCGGTACAGAATAAGATCCCTCACGCATGTAGTATTTGCGGAAACAAATTCGCACGAAAGAGTACtctgaaaaatcatattgaCGTAGTGCATAATGGAGTCAgatatgcatgtgatatttgcggaaagaaatatTCTCAAAAGATTCATCTAAGAGAACACATCGATTCTGCGCATCATAAAATCGTACATGAATGTGATCgttgtggaaagaaattttcaatcaagaATAATCTAAAAAGACACGTCGATACCGCGCACAATGGCCTTAGAtacgcatgtgatatttgcgaaaagaaatacTCACAGAAGGGTGATCTCAAGAGACACATGGATGTGGCGCACAATGGTGTTAGATATGAATGTAATAGTTGCACAAAGAAATACTTGCATAAGAGTGTTCTCAAGAGACACATGGATGTGGCGCACAATGGTGTTAGACAtgtatgtgatatttgcgaaaagaCCTACACAACTAAGAGTATTCTCCAAAATCACATTGATGTGGCGCACAATGGTGTtagacatgcatgtgatatttgcgaaaagaGTTTCTCAGATAAGAGTTatctcaagaaacacatcgaTGTGGCGCACAATGGTGTCGCTCATACTTGTGATCTTTGTGGGAAGAAATTTTCAGAGAAATGTAGTCTTAAAAACCACATCGAGTCGCTACATAATGGTATGACACATGCATGTAATacatgccaaaagacattctcagacaAAAGTAATCTCAAGAATCACATCGATTCTGTGCACAAGCGAGTcagacatgcatgtgatacATGCCAAAAGATATTCTCAGACAAAAGTAATCTCAAGAAGCACATCGATGCTGTGCACAGGCGAGTCAGACATGCATGTGATCTTTGTGGGAAGACATTTTCACTCAAGAGTAATCTCAAGAGGCACATCGAAATGGTGCATCGCATGTGA
- Protein Sequence
- MNFQTNKMESSEMFNCVVRVKSEPIDASYAENEYNSIDETLDDKNFEFSRCPQEYPIHALRKSDESHEGELDELAIELECKEQKPKFDLLAVTKIENSFQNHSQHMEDGNGHRVRGEIKIENLGAMKKESFVEDASQLNVELDRGLGEPNETSRVTNKLSYKRSLKMRIGTAHNGVIHTRDLCKKTCGTESHLQKHIVAVQNKIPHACSICGNKFARKSTLKNHIDVVHNGVRYACDICGKKYSQKIHLREHIDSAHHKIVHECDRCGKKFSIKNNLKRHVDTAHNGLRYACDICEKKYSQKGDLKRHMDVAHNGVRYECNSCTKKYLHKSVLKRHMDVAHNGVRHVCDICEKTYTTKSILQNHIDVAHNGVRHACDICEKSFSDKSYLKKHIDVAHNGVAHTCDLCGKKFSEKCSLKNHIESLHNGMTHACNTCQKTFSDKSNLKNHIDSVHKRVRHACDTCQKIFSDKSNLKKHIDAVHRRVRHACDLCGKTFSLKSNLKRHIEMVHRM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485204;
- 90% Identity
- iTF_01485204;
- 80% Identity
- iTF_01485204;