Tpre003273.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:675482-677300[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8.9e-05 0.0015 18.4 0.8 1 20 130 149 130 151 0.96 2 13 0.011 0.18 11.8 3.1 1 23 154 177 154 177 0.93 3 13 0.017 0.28 11.2 1.0 7 23 188 205 184 205 0.93 4 13 0.0086 0.14 12.2 3.1 2 23 206 232 205 232 0.89 5 13 1.8e-06 2.9e-05 23.8 1.1 1 23 237 260 237 260 0.91 6 13 9.1e-07 1.5e-05 24.7 1.6 1 23 265 288 265 288 0.91 7 13 1.9e-06 3.1e-05 23.7 0.8 1 23 293 316 293 316 0.91 8 13 1.1e-05 0.00019 21.2 1.8 1 23 321 344 321 344 0.91 9 13 4e-05 0.00066 19.5 0.2 3 23 352 373 351 373 0.93 10 13 0.00015 0.0024 17.7 0.4 1 23 378 401 378 401 0.95 11 13 6.3e-07 1e-05 25.2 0.8 2 23 407 429 406 429 0.95 12 13 1.4e-05 0.00022 21.0 2.3 1 23 434 457 434 457 0.90 13 13 2.3e-05 0.00037 20.3 1.1 1 23 462 485 462 486 0.95
Sequence Information
- Coding Sequence
- ATGGAATCCagtgatttatttaattccgtcgtcagagtgaaagacGAACCTTGTGATGTGTCACTGATTGAAAATGATGGAATTACTGAAAACTCACCCGATGTTAAGaactttcaaatttcaaaatttttcccagaaaattcaGCCCAAACGCTTCGAGAATAtgacgaaaatcaaaaaactgaGCTTGACGAGATCAAAGTTGAATTAGAGTGTGTGGACATGAAGcctgaaatgaattttttggtaattaagaaaattgaagGTGATTCTCAAAAATATAACGCTGATTATAAGATTAAAAACACAATCAAAGTGGAAACGGCAGAGACAgcgaaaaaagataataacGAAGAATATAACGATAAAGTGAATAGCAGTGTCACAtacgagtgtgatatttgcagaaaaaaattcacaaacaAGAGTAGATTCAAAACTCATATCGACGGTGTCACACATGTATGCGATATGTGCCAAAAAACAATctgccaaaaaaaatctctccaAATTCACGTGAGTAATGAGCATAATGACGTAGGACATGCATGTGATGTGTacggaaagaaattttctcgACCGCAACATCTCAAAAGGCACGTGAAAGCGTTGCACAATTGTAAACTTTCATGCGGTATAAGTCAAAAGTCATTCtcacgaaaaaataatctgaAAAACCACCTCTATACAATACACAATGGTGTCAAACATGCATGTGGCAcgtgcggaaagaaattttcgtcaaagagtaatctcaaaatgCATATGGATGCGATTCACAATGGTGtcaaacatgcatgtgatatttgcggatataaatttacaaataagagtaatctcaaaaagcacattGATGCGaagcacaatggtgtcacacatgcatgtgatatttgcggaaagaagttCTCAGATAAGAGTAATgtcaaaaaacacattgacgcgatgcataataatatcacCCACGCATGTGGCAcgtgcggaaagaaattttcatcaaagagttatctaaaaaatcacattgatGCGAAGCACAATGGTGTCAACACAAatgcatgtaatatatgcggaAATAAGTTCGCAAGGAAGAGCTATCTACAAGTCCACATGGATGcgatgcacaatggtgtcaaacatgcatgtgatatttgcggaaataaatttatagaaaagGGTAGTCTCAAAAAGCACATTGATACCGTGCACTATGGTATCAAAtgtgcatgtgatatttgcggaaagtcattttcacTAAAAGGCAATCTCAAACGACACATCGATACGGCGCACAATGGTATCAATCACCCATGTCATACTTGTGGTAAGACGTTTACACGAAGGCGTAGTCTGAAAATCCACGTCGATgctgtacataataaaatcaatcacACATGCGAGGTGtgtggaaaaatatttggatataaaaaaaatctcagagCCCACGTGGCTATGGCACATCACTCACGCATTACgacttaa
- Protein Sequence
- MESSDLFNSVVRVKDEPCDVSLIENDGITENSPDVKNFQISKFFPENSAQTLREYDENQKTELDEIKVELECVDMKPEMNFLVIKKIEGDSQKYNADYKIKNTIKVETAETAKKDNNEEYNDKVNSSVTYECDICRKKFTNKSRFKTHIDGVTHVCDMCQKTICQKKSLQIHVSNEHNDVGHACDVYGKKFSRPQHLKRHVKALHNCKLSCGISQKSFSRKNNLKNHLYTIHNGVKHACGTCGKKFSSKSNLKMHMDAIHNGVKHACDICGYKFTNKSNLKKHIDAKHNGVTHACDICGKKFSDKSNVKKHIDAMHNNITHACGTCGKKFSSKSYLKNHIDAKHNGVNTNACNICGNKFARKSYLQVHMDAMHNGVKHACDICGNKFIEKGSLKKHIDTVHYGIKCACDICGKSFSLKGNLKRHIDTAHNGINHPCHTCGKTFTRRRSLKIHVDAVHNKINHTCEVCGKIFGYKKNLRAHVAMAHHSRITT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01484941;
- 90% Identity
- iTF_01484941;
- 80% Identity
- iTF_01484941;