Tpre003273.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:675482-677300[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.4 1.1e+02 2.5 6.6 18 39 131 149 122 177 0.88 2 11 0.68 51 3.5 6.4 4 44 198 233 195 233 0.88 3 11 0.0056 0.42 10.2 1.7 18 43 238 260 235 265 0.89 4 11 0.0032 0.24 11.0 0.9 18 44 266 289 262 289 0.92 5 11 0.005 0.37 10.3 0.6 19 44 295 317 293 317 0.92 6 11 0.02 1.5 8.4 1.6 19 44 323 345 319 345 0.93 7 11 0.015 1.1 8.8 0.6 18 43 351 373 348 374 0.80 8 11 0.99 74 3.0 0.3 18 43 379 401 375 402 0.82 9 11 0.0012 0.092 12.3 0.9 18 44 407 430 403 430 0.91 10 11 1 78 2.9 0.8 19 30 436 447 433 458 0.80 11 11 0.021 1.5 8.4 1.9 16 43 461 485 448 486 0.82
Sequence Information
- Coding Sequence
- ATGGAATCCagtgatttatttaattccgtcgtcagagtgaaagacGAACCTTGTGATGTGTCACTGATTGAAAATGATGGAATTACTGAAAACTCACCCGATGTTAAGaactttcaaatttcaaaatttttcccagaaaattcaGCCCAAACGCTTCGAGAATAtgacgaaaatcaaaaaactgaGCTTGACGAGATCAAAGTTGAATTAGAGTGTGTGGACATGAAGcctgaaatgaattttttggtaattaagaaaattgaagGTGATTCTCAAAAATATAACGCTGATTATAAGATTAAAAACACAATCAAAGTGGAAACGGCAGAGACAgcgaaaaaagataataacGAAGAATATAACGATAAAGTGAATAGCAGTGTCACAtacgagtgtgatatttgcagaaaaaaattcacaaacaAGAGTAGATTCAAAACTCATATCGACGGTGTCACACATGTATGCGATATGTGCCAAAAAACAATctgccaaaaaaaatctctccaAATTCACGTGAGTAATGAGCATAATGACGTAGGACATGCATGTGATGTGTacggaaagaaattttctcgACCGCAACATCTCAAAAGGCACGTGAAAGCGTTGCACAATTGTAAACTTTCATGCGGTATAAGTCAAAAGTCATTCtcacgaaaaaataatctgaAAAACCACCTCTATACAATACACAATGGTGTCAAACATGCATGTGGCAcgtgcggaaagaaattttcgtcaaagagtaatctcaaaatgCATATGGATGCGATTCACAATGGTGtcaaacatgcatgtgatatttgcggatataaatttacaaataagagtaatctcaaaaagcacattGATGCGaagcacaatggtgtcacacatgcatgtgatatttgcggaaagaagttCTCAGATAAGAGTAATgtcaaaaaacacattgacgcgatgcataataatatcacCCACGCATGTGGCAcgtgcggaaagaaattttcatcaaagagttatctaaaaaatcacattgatGCGAAGCACAATGGTGTCAACACAAatgcatgtaatatatgcggaAATAAGTTCGCAAGGAAGAGCTATCTACAAGTCCACATGGATGcgatgcacaatggtgtcaaacatgcatgtgatatttgcggaaataaatttatagaaaagGGTAGTCTCAAAAAGCACATTGATACCGTGCACTATGGTATCAAAtgtgcatgtgatatttgcggaaagtcattttcacTAAAAGGCAATCTCAAACGACACATCGATACGGCGCACAATGGTATCAATCACCCATGTCATACTTGTGGTAAGACGTTTACACGAAGGCGTAGTCTGAAAATCCACGTCGATgctgtacataataaaatcaatcacACATGCGAGGTGtgtggaaaaatatttggatataaaaaaaatctcagagCCCACGTGGCTATGGCACATCACTCACGCATTACgacttaa
- Protein Sequence
- MESSDLFNSVVRVKDEPCDVSLIENDGITENSPDVKNFQISKFFPENSAQTLREYDENQKTELDEIKVELECVDMKPEMNFLVIKKIEGDSQKYNADYKIKNTIKVETAETAKKDNNEEYNDKVNSSVTYECDICRKKFTNKSRFKTHIDGVTHVCDMCQKTICQKKSLQIHVSNEHNDVGHACDVYGKKFSRPQHLKRHVKALHNCKLSCGISQKSFSRKNNLKNHLYTIHNGVKHACGTCGKKFSSKSNLKMHMDAIHNGVKHACDICGYKFTNKSNLKKHIDAKHNGVTHACDICGKKFSDKSNVKKHIDAMHNNITHACGTCGKKFSSKSYLKNHIDAKHNGVNTNACNICGNKFARKSYLQVHMDAMHNGVKHACDICGNKFIEKGSLKKHIDTVHYGIKCACDICGKSFSLKGNLKRHIDTAHNGINHPCHTCGKTFTRRRSLKIHVDAVHNKINHTCEVCGKIFGYKKNLRAHVAMAHHSRITT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485187;
- 90% Identity
- iTF_01485187;
- 80% Identity
- iTF_01485187;