Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: -
Assembly: GCA_000599845.3
Location: NW:1772545-1775140[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.69 11 6.2 1.1 7 23 156 173 150 173 0.88

2 14 0.003 0.049 13.6 0.3 1 23 178 201 178 201 0.92

3 14 8.6e-05 0.0014 18.5 5.5 1 23 206 229 206 229 0.95

4 14 8e-05 0.0013 18.6 0.7 1 21 234 254 234 257 0.89

5 14 1.1e-05 0.00018 21.2 0.3 1 23 262 285 262 285 0.93

6 14 0.0021 0.034 14.1 2.1 2 23 291 313 291 314 0.91

7 14 0.00016 0.0026 17.6 1.0 1 23 318 341 318 341 0.96

8 14 9.1e-06 0.00015 21.5 0.3 1 23 346 369 346 369 0.96

9 14 2.9e-06 4.8e-05 23.1 2.2 1 23 374 397 374 397 0.92

10 14 1.1e-05 0.00018 21.3 0.7 1 23 402 425 402 425 0.94

11 14 0.0013 0.022 14.7 5.2 1 23 430 453 430 453 0.90

12 14 2.5e-06 4e-05 23.3 1.1 1 23 458 481 458 481 0.97

13 14 0.00043 0.0069 16.3 2.1 1 23 486 509 486 509 0.96

14 14 6.5e-07 1.1e-05 25.1 0.1 1 23 514 537 514 537 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.69	11	6.2	1.1	7	23	156	173	150	173	0.88
2	14	0.003	0.049	13.6	0.3	1	23	178	201	178	201	0.92
3	14	8.6e-05	0.0014	18.5	5.5	1	23	206	229	206	229	0.95
4	14	8e-05	0.0013	18.6	0.7	1	21	234	254	234	257	0.89
5	14	1.1e-05	0.00018	21.2	0.3	1	23	262	285	262	285	0.93
6	14	0.0021	0.034	14.1	2.1	2	23	291	313	291	314	0.91
7	14	0.00016	0.0026	17.6	1.0	1	23	318	341	318	341	0.96
8	14	9.1e-06	0.00015	21.5	0.3	1	23	346	369	346	369	0.96
9	14	2.9e-06	4.8e-05	23.1	2.2	1	23	374	397	374	397	0.92
10	14	1.1e-05	0.00018	21.3	0.7	1	23	402	425	402	425	0.94
11	14	0.0013	0.022	14.7	5.2	1	23	430	453	430	453	0.90
12	14	2.5e-06	4e-05	23.3	1.1	1	23	458	481	458	481	0.97
13	14	0.00043	0.0069	16.3	2.1	1	23	486	509	486	509	0.96
14	14	6.5e-07	1.1e-05	25.1	0.1	1	23	514	537	514	537	0.95

Sequence Information

Coding Sequence: ATGAGAAGCATGGATTCCCGTAGTATTTTCAATAGTGCCTTGAgaataaaaaaggaaCCCATCGACGAGTGGCTTCccgaaaataattatgatataaTTGACAAGAAACCCAATGTCAACGGTGGTCAGCACGTCGGATTTCCGTTAAATGATTCGgaGTTTCGAAAATATGacgataacaataaaattaagcaTGACGAAGTGCATATCGAGTTTGAGTGTAAAGTCGAGAAGCTCGACACGGATTCATTAGCattgaagaaaattgaagattattctccaaataatttgcaagatgtaaaatatgattttgaaCCCcagaaagtaataaaaatagaaaatgtgtCAAGAGTGAAGGaagaaatgaatttgaatttcgatcGTGAATTCGGCGAgccaaatgaaaaagaaagcgaTAGAAAAGATTCTAACTACAAACACGGGACCCATTCATGTAACACACGTGGCCAAACATTTTCACGCCGAAATAGCCTCAAAATCCACACCGATTCTGTGCACAAAGGTATCACGTATGCATGTGACATGTGTGAATCGAAATTCACGGCTAAGCATAATCTCCAAGCTCACATCGATGCGGTTCATAATGGTATCAGTCATGCGTGTTATGTGTGCAAAAAGACGTTTAAACATAAGAATAATCTGACTAGGCACGTTCAATCAGAGCATAATCGTGTCAGACATTCATGTGACAtatgcggcaagacatttgCACAAACGGGTAGTCTCAAAACCCATTTCGATGCAGTGCACAACGGTGTCACTCAtgaatgtgatatatgcggaaaatCGTTTGCCCAGAAAGGTCGTCTCAAAATCCATATCACTGCTATCCATAATGGTATGATGAATTCGtgcgatatatgcggaaaTAAGTACTCAGAAAAGGGCCATCTCAAGAGACACATCGATTTTGCGCATCATAAAATCTTACATGAATGTGATCgttgtggaaagaaattttcagcCAAGAATAGTCTAAAAATACACGTCGATACCGCGCACAATGGTCTTAAATATGAATGcgatatttgcagaaaaaagtaCTCAGGTAAGAGTgatctcaagaaacacatcgatgtggcgcacaatggtgtcacacATACTTGTGatatatgtaaaaagaaattctccACCACCAGTAatctaaaaaaacacatcgatgcgGTGCACAACGGTGTCagacatgcatgcgatatatgtggtaagacattttcacaaaaacaaCGTCTCcaaatccacatcgattcggtgcacaacGGCGTCACCTACTCATGTGGTAtttgcgggaagaaattctCAAAGAAAAGTAACCTCTGCTGCCACGTCAATGCGTTTCATAAAGGTACTAGATATACATGTGATACAtgtgaattaaaatttacaagcAAGAGTAATCTAAGAGTCCACATCAGGGCAAAGCATATTGGTTCCAACTATGCATGTCAATTCtgtgaaagaaaatataaatatcgatCTACTCTAAATAAACACGTCAAATCGGCGCACAATCATAATACCTTTGAATGCGAGAAATGTGGGAAGACATTCGGACGAAAAGGAAATCTCGAAGCTCACATCGGCATGGCGCACCGCTCAAGCTTCATGAccaaataa
Protein Sequence: MRSMDSRSIFNSALRIKKEPIDEWLPENNYDIIDKKPNVNGGQHVGFPLNDSEFRKYDDNNKIKHDEVHIEFECKVEKLDTDSLALKKIEDYSPNNLQDVKYDFEPQKVIKIENVSRVKEEMNLNFDREFGEPNEKESDRKDSNYKHGTHSCNTRGQTFSRRNSLKIHTDSVHKGITYACDMCESKFTAKHNLQAHIDAVHNGISHACYVCKKTFKHKNNLTRHVQSEHNRVRHSCDICGKTFAQTGSLKTHFDAVHNGVTHECDICGKSFAQKGRLKIHITAIHNGMMNSCDICGNKYSEKGHLKRHIDFAHHKILHECDRCGKKFSAKNSLKIHVDTAHNGLKYECDICRKKYSGKSDLKKHIDVAHNGVTHTCDICKKKFSTTSNLKKHIDAVHNGVRHACDICGKTFSQKQRLQIHIDSVHNGVTYSCGICGKKFSKKSNLCCHVNAFHKGTRYTCDTCELKFTSKSNLRVHIRAKHIGSNYACQFCERKYKYRSTLNKHVKSAHNHNTFECEKCGKTFGRKGNLEAHIGMAHRSSFMTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01484910;
90% Identity: iTF_01484910;
80% Identity: iTF_01484910;