Tpre009749.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trichogramma pretiosum
Gene Symbol
-
Assembly
GCA_000599845.3
Location
NW:923564-928662[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 6e-05 0.00098 19.0 3.3 1 23 351 373 351 373 0.97
2 17 0.18 3 8.0 2.2 2 23 404 425 403 425 0.96
3 17 3.1e-05 0.0005 19.9 2.1 2 23 539 560 538 560 0.97
4 17 9.6e-06 0.00016 21.5 2.0 1 23 562 585 562 585 0.96
5 17 0.022 0.36 10.9 0.1 3 21 592 610 590 614 0.91
6 17 0.028 0.46 10.6 0.6 1 23 690 712 690 712 0.94
7 17 0.00013 0.0021 17.9 3.8 1 23 764 786 764 786 0.97
8 17 0.002 0.032 14.2 0.8 1 20 791 810 791 812 0.94
9 17 0.0052 0.084 12.9 0.8 2 23 823 844 823 844 0.97
10 17 0.0003 0.0049 16.8 2.4 2 23 882 903 881 903 0.97
11 17 0.00032 0.0053 16.7 0.4 1 23 908 930 908 930 0.95
12 17 2.3e-05 0.00038 20.3 0.8 1 23 936 958 936 958 0.98
13 17 0.00011 0.0018 18.1 0.4 1 23 974 996 974 996 0.95
14 17 1.7e-06 2.8e-05 23.8 0.9 1 23 1002 1024 1002 1024 0.99
15 17 0.00013 0.0021 17.9 0.2 1 23 1030 1052 1030 1052 0.97
16 17 0.00037 0.006 16.5 4.9 1 23 1058 1080 1058 1080 0.97
17 17 0.018 0.3 11.1 0.4 1 20 1086 1105 1086 1107 0.89

Sequence Information

Coding Sequence
ATGGACGGCGTCGTCGTGGgaatgtcgtcgtcgtcgtcatcttcttcaacgatgacgacgacggtggTCTGCAGAACGTCCGCGCCCGGGGAGACgacgtcctcgtcgtcgtcgtcgttggacGCTCAGCTGGCTGCGGTCGCGAACTCCACGGACGGAGTTTGTCGCGTCTGCTTGGCCGACCTCGTCGAGCAACCGGCCGTTCACCAGATCTTTCACGCCCTGGCTTACGAGAACCAGTCGTTGGCCGACAAAGCTATGAGCTTAGCCAACGTCAAGATGCTACCCGGCGATGGCCTGCCCGCTCAGATCTGCATGGACTGCAGCAACAAGCTCGATATGGCTTACAAGTTCAAGATTCAAGTGCAGCAAGCCGACGCCGTTTTGAGGGAACGATTTTTAAAGGCCGACCTTTTCTTTGAGAACGTCAACATGACACATGCAACTGCTGATCACGTAATGACCCCTGCAAATATGTTCATGAACCAAGAGACCGACCACATGGACAACCACATTATCCACAACGATTGCAATGGCAAAAGCAGCGTATTGCATAAACATACGAGTGTAGCTTATCAAGATGATCAGCAGCACATTCAAAGCAAGAATATCGACattcagcatcagcagcaggatcataaaattatgcaaattgCGGTTTCTAACGATAATCACTCTTTTGAGACACAAGAGTTACAGGATTTTATGTTCAGTGAAATGAACGAGCAAACAAGACTGGCTATACACGAACATGATTATGTTATGGAGTCACAAGTTTGTGATTTTCAACACAAGGATTCAGACTTTAACTCACAGgtTGAGATCAAGTTGGAACAAAATGAATTGTTGAACGAGACAACTGATAATCAAATGGGGATTGATGCAAAAATGACAGAAACTGTATCAGATCAAATGTGTCAAAATGACAGACTTATTCAATCTGAAGGAAAAGAAGGTTGCTTGCAATCCAATGAAGAAGATTATTATGAAGACTTGAACCTCAGTTTACGATTAAAAAAGTTGCAAGTGAAAATATCTgataacatatttttcatgtgTTATGTGTGCGATAAACATTTCAAATCAAAAGAGTTACTTAAAGAACATATGAGTTCTCATGAAGAATtaagaaaaacatttgatGTAGCAAGTAAAGTTCAAGAAATCAATGATCAAAACAAACCTCCTTCAAATGGCAAATGTCAAAATAAATGTCCACATTGTGGAAAAGaatatttgtacataatatcttttaaaaaacatttgaagCAACACGAAGAGGAAGGAAAATTTTCAGGAGCTTCATTTGAAGAGGATGATGgtatcttgaatttttccgaGTATCATCAAAGTATCAATACAGATTTTGATAGCGATACTAATGATAATGATCAGACTTTGACAAAAACACATGGCAAAAtagaatgtgagatttgtggAGATGAGCAAGATTCAATTGAAAGCTTAAATGAGCACAAATCCAAACATGTTTTGGAAGGATTAATTCCAAAAGAAGAAACTAACAACGGTATTGAGTACATACTGCCTGAAAATTCTGATGATCAAAAGTATTTGACAGAAAAAGATTTCTCTGCTTcagaaaattgtaatataaaatgtcCCCATTGTCCTCAATTCTTCACACAACAGAAATTACTGACTAAGCATTTGGAGTCTCATCGGTACAGCTGTAAAATATGTTCTCAAACCTTCTCCAGAAAAGATACTTTGAACAAACATCTGCAAGAACAGCACAACATGAAAGGTTTTGGTTGTAACGAATGTGGCAAGATATTTGGTAATGAATTAGCTCTGCGAAATCATTTGATAGCCACTAATCATAAAACTACTGTACACGGTAAGGAGTACGATCCGAATAAAAGATTAACGCGGGTTGCAGCCAAAGCCGCTcagaaaattatcaataaactGACTGACGATTTAAACCAAAAAGGTGATGAAGAAggagatgaagaagaagaagaagaacaggAAGAAAAGCCCATGCAAAATTCCATTAAAATAGAGGGATCGcctcctaaaaaaattcatctgaCTTCGAAAGTTTATACATGTGATGTATGCAATGATAAATTTCCATCAAAACAGAGTCTCGCCAAACACGCCAGTTTTCATTCTAAGAATGATAAAGAAATCGAAACGCAAGCTTCTGCAGAGCAAGAACATTTGGAGCAACAAGAAATTAACAATGTGCCGAAAAGCAGAGAAAATCtagatgatgacgacgacgacgataactTCACTGGCGGTGATTGGCCGGTCGACTTACACGAATGTCCAACATGTAAAAAGCGCTACAGTACTAAAAAGTCATTACTGCGACATCAATTACTGCACGACGAGCCAAACTTTGAATGCGACATTTGTAATGTCAAGTTCTTTAGAAAGGACAAACTCAAAGCTCACTATGACAAATGTTCAGAAAAGAATCCAGATCAAGTGAGAAAATGCAATCTTTGTGGAGATACTTTTGAAAGTAacgaagctttaaaaaaacatagagTAAAACACGTTGTTGAGGGTATATTGACCGAAGAAGATTTGAGAGATATTGAAAACCGAactgaagataaaaaaattgaaaaaatgccaagaaaaagaagaacagaTATTATTGGATTAAAGTGTCATTTATGTAATAAAGAATATACTTCCCGCAAAGGTTTATTACGTCATTTGCAGgTCCATGAGGGTAAAAAGTATCTTTGTGACATGTGTCCTCAAAAATTCTCTCGTCGTGAGGACTTGAAACTACACGTAGCTAAACACAATATGATCAAGCCGTACAAGTGTCCACGCTGTCCCAAGCGCTTTATTAAAGAAGAGCAGTTGAACAATCATATAACCAGACACGATCGGCCCGCCAAAAAACCAAAAGATGCAGGTTATCCCAAGAGATATCTCTGCGAAGTTTGTTCGAAAAGTTTTACTCAATACACTACTCTTGTCGCCCATTTGCGAGCGCACAATGGCATCAAACCCTACGTTTGTCAAGTGTGTACGAGACCCTTCACTACGAATGCGTATCTCAAAATGCATATGCGCACCCACACGCAAGAGCGACCCTACATTTGTCAATATTGTTCTCGAGCCTTTGCCAGGGCTGATACGCTGGCGAATCACTTGACTTCTCATACTGGAGAAGCTAAATACCATTGCAATGAGTGTCCAAAACACTTTAGAAGATTGAAGTCATTGAAGGAGCACATATTTATTCATACTGGTCAAAGACCCTATGCGTGTCCCACTTGCGACCGAACGTTCAACAATAATGGGAGCAGGTACGCTCATAGCAAAAGATGCAAGCAGAACCTGTTGCAAGCGTCATCGAGCAGGCTCATGATTCAATCGCAGCAACAATCTGAACAGCATCCAGTTCAGGAACAAGAACAGCATCTCGATCAGCTGCAGCATTTACAGCAGTCAGAGCAACAGCACATTATCATTGGTACAGCTTTGGAGGAGCAGACTCAGCAGATAATAATTGAACATGATCAAGAGCAAAGacttcaaataattaaaccGCAgaatattataacaataactAAACCTGATGGTACTATGAGTCAACAACACTTGGTTTCTCAGGAAGTACTTATGCCTTTGCTACTGCCACTTTCTGTAACTTTGACTGAAGTTGACGAGGATGCCATTCTACCAGAAggttctaaaatttttacaacttgA
Protein Sequence
MDGVVVGMSSSSSSSSTMTTTVVCRTSAPGETTSSSSSSLDAQLAAVANSTDGVCRVCLADLVEQPAVHQIFHALAYENQSLADKAMSLANVKMLPGDGLPAQICMDCSNKLDMAYKFKIQVQQADAVLRERFLKADLFFENVNMTHATADHVMTPANMFMNQETDHMDNHIIHNDCNGKSSVLHKHTSVAYQDDQQHIQSKNIDIQHQQQDHKIMQIAVSNDNHSFETQELQDFMFSEMNEQTRLAIHEHDYVMESQVCDFQHKDSDFNSQVEIKLEQNELLNETTDNQMGIDAKMTETVSDQMCQNDRLIQSEGKEGCLQSNEEDYYEDLNLSLRLKKLQVKISDNIFFMCYVCDKHFKSKELLKEHMSSHEELRKTFDVASKVQEINDQNKPPSNGKCQNKCPHCGKEYLYIISFKKHLKQHEEEGKFSGASFEEDDGILNFSEYHQSINTDFDSDTNDNDQTLTKTHGKIECEICGDEQDSIESLNEHKSKHVLEGLIPKEETNNGIEYILPENSDDQKYLTEKDFSASENCNIKCPHCPQFFTQQKLLTKHLESHRYSCKICSQTFSRKDTLNKHLQEQHNMKGFGCNECGKIFGNELALRNHLIATNHKTTVHGKEYDPNKRLTRVAAKAAQKIINKLTDDLNQKGDEEGDEEEEEEQEEKPMQNSIKIEGSPPKKIHLTSKVYTCDVCNDKFPSKQSLAKHASFHSKNDKEIETQASAEQEHLEQQEINNVPKSRENLDDDDDDDNFTGGDWPVDLHECPTCKKRYSTKKSLLRHQLLHDEPNFECDICNVKFFRKDKLKAHYDKCSEKNPDQVRKCNLCGDTFESNEALKKHRVKHVVEGILTEEDLRDIENRTEDKKIEKMPRKRRTDIIGLKCHLCNKEYTSRKGLLRHLQVHEGKKYLCDMCPQKFSRREDLKLHVAKHNMIKPYKCPRCPKRFIKEEQLNNHITRHDRPAKKPKDAGYPKRYLCEVCSKSFTQYTTLVAHLRAHNGIKPYVCQVCTRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCNECPKHFRRLKSLKEHIFIHTGQRPYACPTCDRTFNNNGSRYAHSKRCKQNLLQASSSRLMIQSQQQSEQHPVQEQEQHLDQLQHLQQSEQQHIIIGTALEEQTQQIIIEHDQEQRLQIIKPQNIITITKPDGTMSQQHLVSQEVLMPLLLPLSVTLTEVDEDAILPEGSKIFTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01482884;
90% Identity
iTF_01484088;
80% Identity
-