Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: -
Assembly: GCA_000599845.3
Location: NW:356331-358250[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.7e-06 2.8e-05 23.8 0.1 1 23 161 184 161 184 0.93

2 12 5.3e-05 0.00087 19.1 0.2 2 23 190 212 190 212 0.92

3 12 1.6e-06 2.6e-05 23.9 0.9 1 23 217 239 217 239 0.94

4 12 0.00016 0.0026 17.6 0.4 1 23 244 267 244 267 0.92

5 12 1.6e-06 2.6e-05 23.9 0.9 1 23 272 294 272 294 0.94

6 12 0.00017 0.0028 17.5 0.5 1 23 299 322 299 322 0.92

7 12 0.00015 0.0025 17.7 0.4 2 23 328 350 328 350 0.92

8 12 1.6e-06 2.6e-05 23.9 0.9 1 23 355 377 355 377 0.94

9 12 0.00017 0.0028 17.5 0.5 1 23 382 405 382 405 0.92

10 12 0.00015 0.0025 17.7 0.4 2 23 411 433 411 433 0.92

11 12 3e-05 0.00049 19.9 0.2 1 23 438 461 438 461 0.92

12 12 5e-06 8.1e-05 22.4 1.0 1 23 466 489 466 489 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.7e-06	2.8e-05	23.8	0.1	1	23	161	184	161	184	0.93
2	12	5.3e-05	0.00087	19.1	0.2	2	23	190	212	190	212	0.92
3	12	1.6e-06	2.6e-05	23.9	0.9	1	23	217	239	217	239	0.94
4	12	0.00016	0.0026	17.6	0.4	1	23	244	267	244	267	0.92
5	12	1.6e-06	2.6e-05	23.9	0.9	1	23	272	294	272	294	0.94
6	12	0.00017	0.0028	17.5	0.5	1	23	299	322	299	322	0.92
7	12	0.00015	0.0025	17.7	0.4	2	23	328	350	328	350	0.92
8	12	1.6e-06	2.6e-05	23.9	0.9	1	23	355	377	355	377	0.94
9	12	0.00017	0.0028	17.5	0.5	1	23	382	405	382	405	0.92
10	12	0.00015	0.0025	17.7	0.4	2	23	411	433	411	433	0.92
11	12	3e-05	0.00049	19.9	0.2	1	23	438	461	438	461	0.92
12	12	5e-06	8.1e-05	22.4	1.0	1	23	466	489	466	489	0.94

Sequence Information

Coding Sequence: atggacttcagtgatgtatataactctgatgtcagAGTGAAGAAGGAACCAGATGATGTTTccccaattaaaaatgaagattataaGATAATTGACAATGCATGCGATGCTAAAAACGACGAATTCTCGAGtttttgtcgagaaaatttaATTTATGGGCTTCGTGAAAATGATAACAATTCTGGTCCTAATAACGATTTGGAAATAGAATTCGAATGTAAGGACGAGAAGCTCGGCATTAACTTATTAGTAGTCAAGAAAATCGAGGACGATTATCCAGATCAATGGCAGTCTAAGAAAAATAGTTGCGATTATCagactcaaaagaaaattaaagaagaaatggTCGACGAAGTAAAAGAGGAATTGAATTTGGATGGTGAACTCAGTGATGCATttgatgcaaatgaaaaaacatttgctcaaaATAGTCAACGCAAAACCCAAACTGATAAGGCAATCGTACACAATCGTACCAAAtatccatgtaatatatgcggtaaaaaatttgcacgagAAAATAATCTCAAGgtccacatcgatgcgatgcataatggtatggcacctaaatgcaaaatatgtgaaaagacattcacaggAAAAGGAGATCTCAAGATTCACATCTatggagtacataatggtgttagacATGCATGTAgtatatgtgaaaagacattcacacaaaaaggagATCTCAAGAGGCATATCGAGggacataatggtgttaaacatacGTGTGGTATATGTGCAAAGATATTCGCACATAAAGgaaatctcaaaattcacatcgatggagtacataatggtgttagacATGCGTGTAgtatatgtgaaaagacattcacacaaaaaggagATCTCAAGAGGCATATCGAGggacataatggtgttaaacatacGTGTGGTATATGTGCAAAAATATTCGCACATAAAGgaaatctcaaaattcacatcgatgcgatgcataatggtatggcccctacttgcgaagtatgcggaaagaaatttcaaacgaagaATAAACTCAAGATCCATATCgatgcagtacataatggtgttagacATGCGTGTAgtatatgtgaaaagacattcacacaaaaaggagATCTCAAGAGGCATATCGAGggacataatggtgttaaacatacGTGTGGTATATGTGCAAAAATATTCGCACATAAAGgaaatctcaaaattcacatcgatgcgatgcataatggtatggcccctacttgcgaagtatgcggaaaaaaatttcaaacgaagaATAAACTCAAGATCCATATCgatgcagtacataatggtgttaaacatccatgtaatatatgcggtcaaaaattttcactaaaAGGTAATCTCAAGATCCATATCGATGGAGTACATAgtggtgttaaacatgcgtgtggtatatgtgaaaagacattcacactaaagggtaatcttaaaaaacacatgaatTTGATACATAATAAGACATAA
Protein Sequence: MDFSDVYNSDVRVKKEPDDVSPIKNEDYKIIDNACDAKNDEFSSFCRENLIYGLRENDNNSGPNNDLEIEFECKDEKLGINLLVVKKIEDDYPDQWQSKKNSCDYQTQKKIKEEMVDEVKEELNLDGELSDAFDANEKTFAQNSQRKTQTDKAIVHNRTKYPCNICGKKFARENNLKVHIDAMHNGMAPKCKICEKTFTGKGDLKIHIYGVHNGVRHACSICEKTFTQKGDLKRHIEGHNGVKHTCGICAKIFAHKGNLKIHIDGVHNGVRHACSICEKTFTQKGDLKRHIEGHNGVKHTCGICAKIFAHKGNLKIHIDAMHNGMAPTCEVCGKKFQTKNKLKIHIDAVHNGVRHACSICEKTFTQKGDLKRHIEGHNGVKHTCGICAKIFAHKGNLKIHIDAMHNGMAPTCEVCGKKFQTKNKLKIHIDAVHNGVKHPCNICGQKFSLKGNLKIHIDGVHSGVKHACGICEKTFTLKGNLKKHMNLIHNKT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01485813;
90% Identity: iTF_01485813;
80% Identity: iTF_01485813;