Tpre009379.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:236267-238606[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.5e-06 5.7e-05 22.9 0.9 1 23 159 182 159 182 0.92 2 13 1.1e-05 0.00019 21.2 0.3 1 23 187 210 187 210 0.91 3 13 1.6e-06 2.6e-05 23.9 1.0 1 23 215 238 215 238 0.94 4 13 0.0012 0.02 14.8 0.3 1 23 243 266 243 266 0.90 5 13 1.2e-05 0.0002 21.1 0.4 2 23 272 294 272 294 0.92 6 13 0.0033 0.055 13.5 0.3 1 23 299 322 299 322 0.88 7 13 0.0015 0.024 14.6 0.3 2 23 328 350 328 350 0.92 8 13 2.1e-05 0.00035 20.4 0.2 1 23 355 378 355 378 0.91 9 13 0.00011 0.0017 18.2 0.1 2 23 384 406 384 406 0.92 10 13 5e-06 8.2e-05 22.3 1.8 1 23 411 434 411 434 0.92 11 13 5.5e-06 9e-05 22.2 1.1 2 23 440 462 440 462 0.97 12 13 1.5e-05 0.00025 20.8 0.8 1 23 467 490 467 490 0.94 13 13 0.00012 0.0019 18.0 2.0 1 23 495 518 495 518 0.92
Sequence Information
- Coding Sequence
- ATGGAACTCAGTGGTGTATATAACTGTAATGTCagAGTCAAGGAGGAACCAAATGACGTTTTCccaattgaaaatgaagattataaGATAATTGATAATACATACGATGTTGAAACCGACGAATTCTCGAGTTTTcgtcgagaaaatttaACTCATAAGCTTCAAgaatatgatgaaaattctGGACCTAATGCTGATTTGGAAATAGAATTCGAATGTAAGGACGAGAAGCTCGGCATTGACTTATTAGTAGTTAAGAAAATCGAGAACGATTATCCAGATCATTTgcagtatatgaaaaatagtttcgATTATCAGAcccaaaagaaaattaaagaagaaattgtcgACGAAGTAAAAGAGGAATTGAATTTAGATGATGAACTCAGTGATACAtttgatacaaataaaaaaacatttgctcaaaATAGTCAATGCAAAACCCAAACTGATAAGGCACGCGATCGTACCCAAcatccatgtaatatatgtggtcagaaatttacaaaaaaaagtaatcttaaAATGCACATCGATGCAGTTCATAATGACGTCAAGCATATGTGTGTtacatgtggaaagacattcccACAGAAAGggaatctcaaaattcacatcgatgcgattcataatggtgttaaacatgcgtgtaatatatgtgaaaagacattcacacaaaaaggaaatctcaaaattcacatcgataaAGTTCATAATGGTGTTAACCATGCTTGTGGTCTATGTGCAAAGGCCTTCACACAAAAACGTTATCTCAAGATTCACATTGATGCGAttcataatggtatggcaccAACTTGcgaaatatgcggaaagaaatttcaaacgaagactaatctcaaaattcacatcgatgaaGTTCATAATGGTGTTAACCATGCTTGTGGTCTATGTGCAAAGGCCTTCTCACAAAAACGTTATCTCAAGATTCACGTCGATGCGAttcataatggtatggcaccAACTTGcgaaatatgcggaaagaaatttcaagCGAAGACTAAACTCAAGATCCATATcgatggagtacataatggtgttaaacatgcgtgtggtatatgtgaaaagacattcacacaaaaaggtgatctcaaaattcacatcgatgctattcataatggtatggcaccAACATGCGAAATGTGCGGaacgaaattttcaactaaaGCTGGACTCAAGATTCATATCGATGGAGTACACGATGGTGTTAAGCATACGTGTAgtatatgtgaaaagacattcacacaaaaaggacatctcaaaattcacattgatGCAATTCATAATGGTATGGAACCTACATGCGAAATGTGCGTAAAGACATTCAAGTCTAAAGGCAATCTTAAAATACACATGAATTCAATGCATAATAAGATCACCCACCCATGTAATAcgtgcggcaagacattttcacgaAAGGATGTACTGAAAATCCACGTGGATTCAATCCATAATCAAATAACTCACACATGTAATACATGCGGTAAAACGTTTGCGCTAAAAAGGACTCTCAAGAAACATGTCGAAGCATCGCACGGTAATAATATTCACGCCCGTGAATAA
- Protein Sequence
- MELSGVYNCNVRVKEEPNDVFPIENEDYKIIDNTYDVETDEFSSFRRENLTHKLQEYDENSGPNADLEIEFECKDEKLGIDLLVVKKIENDYPDHLQYMKNSFDYQTQKKIKEEIVDEVKEELNLDDELSDTFDTNKKTFAQNSQCKTQTDKARDRTQHPCNICGQKFTKKSNLKMHIDAVHNDVKHMCVTCGKTFPQKGNLKIHIDAIHNGVKHACNICEKTFTQKGNLKIHIDKVHNGVNHACGLCAKAFTQKRYLKIHIDAIHNGMAPTCEICGKKFQTKTNLKIHIDEVHNGVNHACGLCAKAFSQKRYLKIHVDAIHNGMAPTCEICGKKFQAKTKLKIHIDGVHNGVKHACGICEKTFTQKGDLKIHIDAIHNGMAPTCEMCGTKFSTKAGLKIHIDGVHDGVKHTCSICEKTFTQKGHLKIHIDAIHNGMEPTCEMCVKTFKSKGNLKIHMNSMHNKITHPCNTCGKTFSRKDVLKIHVDSIHNQITHTCNTCGKTFALKRTLKKHVEASHGNNIHARE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485004;
- 90% Identity
- iTF_01485004;
- 80% Identity
- iTF_01485004;