Tpre009379.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:236267-238606[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0063 0.47 10.0 3.2 12 44 154 183 142 190 0.86 2 13 5.9 4.4e+02 0.5 0.3 18 38 188 205 184 211 0.73 3 13 0.011 0.82 9.2 2.2 17 44 215 239 205 239 0.86 4 13 8.9 6.6e+02 -0.1 0.2 19 29 245 255 242 267 0.82 5 13 0.0042 0.31 10.6 0.6 18 44 272 295 257 295 0.85 6 13 4.4 3.3e+02 0.9 0.1 19 29 301 311 298 323 0.84 7 13 0.071 5.3 6.6 0.8 18 43 328 350 313 355 0.73 8 13 0.29 21 4.7 0.4 18 29 356 367 351 379 0.83 9 13 1.8 1.3e+02 2.2 0.3 18 39 384 402 372 407 0.76 10 13 0.3 23 4.6 1.5 16 29 410 423 406 435 0.82 11 13 0.018 1.3 8.6 2.0 18 44 440 463 433 463 0.94 12 13 0.028 2.1 7.9 0.7 19 38 469 495 467 495 0.77 13 13 0.32 24 4.6 1.7 18 43 496 518 494 519 0.83
Sequence Information
- Coding Sequence
- ATGGAACTCAGTGGTGTATATAACTGTAATGTCagAGTCAAGGAGGAACCAAATGACGTTTTCccaattgaaaatgaagattataaGATAATTGATAATACATACGATGTTGAAACCGACGAATTCTCGAGTTTTcgtcgagaaaatttaACTCATAAGCTTCAAgaatatgatgaaaattctGGACCTAATGCTGATTTGGAAATAGAATTCGAATGTAAGGACGAGAAGCTCGGCATTGACTTATTAGTAGTTAAGAAAATCGAGAACGATTATCCAGATCATTTgcagtatatgaaaaatagtttcgATTATCAGAcccaaaagaaaattaaagaagaaattgtcgACGAAGTAAAAGAGGAATTGAATTTAGATGATGAACTCAGTGATACAtttgatacaaataaaaaaacatttgctcaaaATAGTCAATGCAAAACCCAAACTGATAAGGCACGCGATCGTACCCAAcatccatgtaatatatgtggtcagaaatttacaaaaaaaagtaatcttaaAATGCACATCGATGCAGTTCATAATGACGTCAAGCATATGTGTGTtacatgtggaaagacattcccACAGAAAGggaatctcaaaattcacatcgatgcgattcataatggtgttaaacatgcgtgtaatatatgtgaaaagacattcacacaaaaaggaaatctcaaaattcacatcgataaAGTTCATAATGGTGTTAACCATGCTTGTGGTCTATGTGCAAAGGCCTTCACACAAAAACGTTATCTCAAGATTCACATTGATGCGAttcataatggtatggcaccAACTTGcgaaatatgcggaaagaaatttcaaacgaagactaatctcaaaattcacatcgatgaaGTTCATAATGGTGTTAACCATGCTTGTGGTCTATGTGCAAAGGCCTTCTCACAAAAACGTTATCTCAAGATTCACGTCGATGCGAttcataatggtatggcaccAACTTGcgaaatatgcggaaagaaatttcaagCGAAGACTAAACTCAAGATCCATATcgatggagtacataatggtgttaaacatgcgtgtggtatatgtgaaaagacattcacacaaaaaggtgatctcaaaattcacatcgatgctattcataatggtatggcaccAACATGCGAAATGTGCGGaacgaaattttcaactaaaGCTGGACTCAAGATTCATATCGATGGAGTACACGATGGTGTTAAGCATACGTGTAgtatatgtgaaaagacattcacacaaaaaggacatctcaaaattcacattgatGCAATTCATAATGGTATGGAACCTACATGCGAAATGTGCGTAAAGACATTCAAGTCTAAAGGCAATCTTAAAATACACATGAATTCAATGCATAATAAGATCACCCACCCATGTAATAcgtgcggcaagacattttcacgaAAGGATGTACTGAAAATCCACGTGGATTCAATCCATAATCAAATAACTCACACATGTAATACATGCGGTAAAACGTTTGCGCTAAAAAGGACTCTCAAGAAACATGTCGAAGCATCGCACGGTAATAATATTCACGCCCGTGAATAA
- Protein Sequence
- MELSGVYNCNVRVKEEPNDVFPIENEDYKIIDNTYDVETDEFSSFRRENLTHKLQEYDENSGPNADLEIEFECKDEKLGIDLLVVKKIENDYPDHLQYMKNSFDYQTQKKIKEEIVDEVKEELNLDDELSDTFDTNKKTFAQNSQCKTQTDKARDRTQHPCNICGQKFTKKSNLKMHIDAVHNDVKHMCVTCGKTFPQKGNLKIHIDAIHNGVKHACNICEKTFTQKGNLKIHIDKVHNGVNHACGLCAKAFTQKRYLKIHIDAIHNGMAPTCEICGKKFQTKTNLKIHIDEVHNGVNHACGLCAKAFSQKRYLKIHVDAIHNGMAPTCEICGKKFQAKTKLKIHIDGVHNGVKHACGICEKTFTQKGDLKIHIDAIHNGMAPTCEMCGTKFSTKAGLKIHIDGVHDGVKHTCSICEKTFTQKGHLKIHIDAIHNGMEPTCEMCVKTFKSKGNLKIHMNSMHNKITHPCNTCGKTFSRKDVLKIHVDSIHNQITHTCNTCGKTFALKRTLKKHVEASHGNNIHARE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485151;
- 90% Identity
- iTF_01485151;
- 80% Identity
- iTF_01485151;