Tpre003065.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:990110-992866[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 9.2e-05 0.0015 18.4 1.0 2 23 73 95 72 95 0.92 2 15 9.5e-05 0.0015 18.3 3.2 2 23 130 152 129 152 0.96 3 15 9.1e-06 0.00015 21.5 0.7 2 23 186 208 185 208 0.95 4 15 1.5e-06 2.4e-05 24.0 1.8 2 23 252 273 251 273 0.97 5 15 6.5e-05 0.0011 18.9 1.2 2 23 308 330 307 330 0.91 6 15 0.002 0.032 14.2 2.3 1 23 372 395 372 395 0.96 7 15 0.0005 0.0082 16.1 0.4 2 23 401 423 400 423 0.94 8 15 1.1e-05 0.00017 21.3 3.3 1 23 429 452 429 452 0.97 9 15 2.5e-05 0.00041 20.2 0.9 1 23 457 480 457 480 0.93 10 15 0.0001 0.0017 18.2 1.2 2 23 487 509 486 509 0.91 11 15 7.5e-05 0.0012 18.7 0.5 1 23 515 538 515 538 0.96 12 15 1.2e-05 0.00019 21.2 5.3 1 23 545 568 545 568 0.95 13 15 0.0011 0.018 15.0 1.8 1 23 574 597 574 597 0.97 14 15 6.1e-05 0.00099 18.9 0.5 1 23 603 626 603 626 0.96 15 15 4.4e-06 7.3e-05 22.5 6.0 1 23 632 655 632 655 0.97
Sequence Information
- Coding Sequence
- ATGGAAATTTGTAAAGTTAAAACTGAAATTTGTGAGCCTGAGTTTGTTGCAGTAAAAATGGAATATGACATGGACGgctataatgaaaatgaaactgATTGTTTGAATAACGATAGCCTTCAAAGTGCAGATGAACATTTAAGAAATGAGATAAATGTAATTGATTCATTAGCAATTGATGAACCACAACAACAAGTTCATGGAAAAAGTTTGGTACAATGTGATCAATGTAACAAACTATTTGATAGAAAATATAACTTAAGGCGACATGTTACCCAGGTTCATGAAGCTAAAAAAGTAGATGTAAGAGTGATAACTGAGAATAacatgattaattttataataattaaagaacctcaacataaaattgatgaaaaaagagtAGTTCAGTGCGATCAGTGTAacaaactatttaaaaataaatcttgctTAAGGCGTCATGTCAGAGAAGttcataaaagtaaaaaattagttaaaagtataataacaGATAATGCGATTAATTCTACAATTATTAATGATACACTACGTATAGCTCCTAAAAGAACTGTGTTACAATGCAATCAATGTAACAAGTTATTTGATAGAAACTATAATTTAAGACGACATATTGCTATGGTTCATAAGAGTAATGAACAAGATGAAAGCATAATAACTAAGGAAGCAGATGGAAGTATAATTACTGAAGATAATGCAATGAATTCTATATCACTTAATGAATCACAAGATAATTTTGCCGAACAAAGTGTGTTACAATGTGATCAATGTAACAAACTGTTTAATAGATCCTATAATTTGAAGCGTCATATGCAGGTTCATGAAGCTAAAAAAGTGGATGAAAGTATAATAACTAAAGATAATGTAATCAAGTCTATAACAATTAATGAGACTCAAGATAAAGTTGATAAAGTAAGTGCATTACAATGCAATCAGTGTAACAAACTATTtaaaagcaacagcagcttaAGGAGACATGTCACAGAGGTTcataagaataaaaaacaaaatgaaggTATAACTGAGAAAGCAGATGAAAGTATCATAACTGAAGATAATGCAATTAATTCTATAAGAAGCATAGAAGAGCAAAACGAAGTGGATGAAAAAAGCTTGTTTGAGTGCAATCAATGTaacaaactttttcaaaacaacTATAGATTAAAGCGACATGTCACCCGGGTtcatgagagaaaaaaagtggaatGTGAAGTTTGTCATgagttttttgcaaaaaagtcAAATCTATTAGTTCATTATGATTCAGTTCATCCTGGTTTTATGACACACTCCTGCAATGAATGTTCAAAGACATTTgataagagaaaaaacttGTTGAGGCATATTAGAAGTGTTCATCGAAATACTGTTTTTGAATGTGCTATATGTCAAAAAACctttacaaataaaacatACTTACGATTACACATTACTGGTACACATGAACAAGTTAAGGGTGTTGAGTGTGatacatgtaaaaaaacattcagACATAAGACTTACTTAAGAATCCATATTGATGCAGTTCATAAACGTCTCAGAAATTTTGAGTGTCCTATTTGTCATAAAGTTTATGGTTTTGAAGGTTACCTTAAAAAGCACATCAAAGGCATTCATGGaactataattaaaaatcatgagtgtgaaatatgtaaaaaaaagtttagtcATAAAAGCAACTTAACGAAACATGTTGATAGATCTCATAAAAACATTCGtgcctttgaatgtgaaatttgccatGCGACTTTTAAACAAAAAGCTCACAAGCTTGTACATATTGATACTGTGcacgagcaaaagaaaaactttttttgcgaGTATTGTGGCAAAAATTTTGGACGAAAAGATAATATGCTTATGCAcgttaaaattgttcatttgaAACTTAAAAAACATGAGTGTCAAATATGTAAAAAGACATTTAGAGATAGACATTATTTAACTAAGCACATGAACACAGTGCATAAAGACATTGTGAAAGACATAACTATTGATTttagaaataatgaaaaagaaaatactgctgatattagttaa
- Protein Sequence
- MEICKVKTEICEPEFVAVKMEYDMDGYNENETDCLNNDSLQSADEHLRNEINVIDSLAIDEPQQQVHGKSLVQCDQCNKLFDRKYNLRRHVTQVHEAKKVDVRVITENNMINFIIIKEPQHKIDEKRVVQCDQCNKLFKNKSCLRRHVREVHKSKKLVKSIITDNAINSTIINDTLRIAPKRTVLQCNQCNKLFDRNYNLRRHIAMVHKSNEQDESIITKEADGSIITEDNAMNSISLNESQDNFAEQSVLQCDQCNKLFNRSYNLKRHMQVHEAKKVDESIITKDNVIKSITINETQDKVDKVSALQCNQCNKLFKSNSSLRRHVTEVHKNKKQNEGITEKADESIITEDNAINSIRSIEEQNEVDEKSLFECNQCNKLFQNNYRLKRHVTRVHERKKVECEVCHEFFAKKSNLLVHYDSVHPGFMTHSCNECSKTFDKRKNLLRHIRSVHRNTVFECAICQKTFTNKTYLRLHITGTHEQVKGVECDTCKKTFRHKTYLRIHIDAVHKRLRNFECPICHKVYGFEGYLKKHIKGIHGTIIKNHECEICKKKFSHKSNLTKHVDRSHKNIRAFECEICHATFKQKAHKLVHIDTVHEQKKNFFCEYCGKNFGRKDNMLMHVKIVHLKLKKHECQICKKTFRDRHYLTKHMNTVHKDIVKDITIDFRNNEKENTADIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01484906;
- 90% Identity
- iTF_01484906;
- 80% Identity
- iTF_01484906;