Tpre010732.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:1086969-1088925[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.1e-06 6.7e-05 22.6 0.1 1 23 149 172 149 172 0.93 2 13 0.0012 0.019 14.9 2.5 1 23 177 200 177 200 0.95 3 13 9.6e-06 0.00016 21.5 0.6 1 23 205 228 205 228 0.91 4 13 3e-05 0.00049 19.9 0.4 2 23 234 256 234 256 0.95 5 13 5.8e-05 0.00095 19.0 0.3 1 23 261 284 261 284 0.93 6 13 6e-06 9.8e-05 22.1 0.7 2 23 290 312 290 312 0.92 7 13 1.5e-05 0.00025 20.8 0.7 1 23 317 340 317 340 0.91 8 13 9.8e-05 0.0016 18.3 0.3 2 23 346 368 346 368 0.96 9 13 2.4e-05 0.00039 20.2 0.2 1 23 373 396 373 396 0.91 10 13 1.5e-05 0.00024 20.9 0.7 1 23 401 424 401 424 0.91 11 13 4.9e-08 7.9e-07 28.7 1.2 2 23 430 452 430 452 0.96 12 13 6.2e-05 0.001 18.9 1.1 5 23 461 480 460 480 0.95 13 13 4.8e-05 0.00079 19.3 1.2 3 23 485 506 483 506 0.96
Sequence Information
- Coding Sequence
- ATGGACTTCAGTGATGTATATAACTCtgatgtcagAGTGAAGGAGGAACCAAATGATTTTGCCCctattgaaaatgatgattaTCAGATAATTGACAATGCACACGATGCTAACACTGATGATCAATCCTTGCGATGTCTAGAAAATTTTACTCGTGGCCCTGACGATGTCAAAGTAGAATTCGAATGTAAGGACGAGAAGCTCGGCATTAACTTATTAGTAGTCAAGAAAATCGAGGACGATTATCCAGATCATTTGCAGCATATGGAAAATAGTTACAATAATCAAAcccaaaagaaaattaaaaaagaaattgaggacgaaataaaagaagaattgaATTCGGATGGTGAACTAAGTGATGCATttgatgcaaatgaaaaaacatttgctcaaaaaAGTTTATGCGAAACCCAAACTGATAAGGCACGCAATCGTACCAAATATCCATGTAATGTATGCGGtacaaaatttacacgaaaagGTAGTCTCAAGATCCACATCGATGCAGTTCATAATGGTGTCAAGCATACGTGCGTTACATGTCGAAAAACATTCACACTAAAATACactctcaaaattcacatcgattcagtacataatggtgttaaacatgattgtggtgtatgtggaaagacattcactcAAAAAGGAAAGCTCAAAAGTCACATCgctgcgatgcataatggtatggcaccAACATGcgaaatatgcggaaagaaatttcaaacgaaggCTAAACTCAAGattcacatcgattcagtacataatggtgttagacatgcgtgtggtgtatgtgaaaagacattcgcACAAAAAAGAGATCTCAACATTCACATCAACGCGATGCATAAAggtatggcacctacttgcgaaatatgcggaaagaaattctcaactAAGACTAAACTCAAACTCCACATGGATGCAGTGCATAATAAGATAACTCACGCATGTGATACATGTGGCAAAATATTTACGCTGAAAGATAATCTTAAgaaacacatcgatgcgatgcataaaggtatggcacctacttgTGAaatatgcgaaaagaaattcgcaACTGAGACTTCACTGAAGCTTCACATCGATACAGttcataatggtgttaaacatgcgtgtggAGTGTGTGGaaaaacatacacacaaaaaggagatctcaaaattcacatcgatgcgatgcataataaGATAACTCACGCATGTGATACATGTGGCAAAATATTTTCGCTGAAAGATAATCTTAAgaaacacatcgatgcgatgcataaaggTATGGCACCAACTTGCGAAgtgtgcggaaagacattctcacgaaagggtaatcttaaaaaacacatgaatTTGATGCATAATAAGATAACTTACGCATATAATACTTGCGGCAAGACATTTACTCAAAAGGACCGTCTTAAAACTCACATTAAAACGCAGCACGAAGACATTGCATGCGTTATCTgcggagaaaaatttaaacataggAAATATCTATACAGACACATCAAAAGTGAGCATGAGGGCAACACCCAAGCACGAGATTAA
- Protein Sequence
- MDFSDVYNSDVRVKEEPNDFAPIENDDYQIIDNAHDANTDDQSLRCLENFTRGPDDVKVEFECKDEKLGINLLVVKKIEDDYPDHLQHMENSYNNQTQKKIKKEIEDEIKEELNSDGELSDAFDANEKTFAQKSLCETQTDKARNRTKYPCNVCGTKFTRKGSLKIHIDAVHNGVKHTCVTCRKTFTLKYTLKIHIDSVHNGVKHDCGVCGKTFTQKGKLKSHIAAMHNGMAPTCEICGKKFQTKAKLKIHIDSVHNGVRHACGVCEKTFAQKRDLNIHINAMHKGMAPTCEICGKKFSTKTKLKLHMDAVHNKITHACDTCGKIFTLKDNLKKHIDAMHKGMAPTCEICEKKFATETSLKLHIDTVHNGVKHACGVCGKTYTQKGDLKIHIDAMHNKITHACDTCGKIFSLKDNLKKHIDAMHKGMAPTCEVCGKTFSRKGNLKKHMNLMHNKITYAYNTCGKTFTQKDRLKTHIKTQHEDIACVICGEKFKHRKYLYRHIKSEHEGNTQARD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01484930;
- 90% Identity
- iTF_01484930;
- 80% Identity
- iTF_01484930;