Tpre010732.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:1086969-1088925[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.051 3.8 7.1 0.8 12 31 144 163 138 173 0.79 2 13 6.6 4.9e+02 0.4 2.7 16 43 176 200 167 201 0.80 3 13 0.11 8.1 6.0 0.5 18 43 206 228 202 229 0.84 4 13 0.23 17 5.0 0.8 18 43 234 256 230 261 0.78 5 13 1.4 1.1e+02 2.5 0.2 19 29 263 273 260 285 0.73 6 13 0.032 2.4 7.7 2.1 18 43 290 312 278 317 0.85 7 13 0.055 4.1 7.0 0.8 19 44 319 341 312 341 0.92 8 13 0.045 3.4 7.3 0.1 18 44 346 369 342 369 0.87 9 13 0.42 31 4.2 1.2 18 30 374 386 371 401 0.76 10 13 0.021 1.6 8.3 0.9 19 44 403 425 391 425 0.89 11 13 0.00024 0.018 14.6 0.6 18 44 430 453 426 453 0.93 12 13 0.06 4.5 6.9 0.3 21 43 461 480 460 481 0.92 13 13 0.22 16 5.1 1.7 17 43 483 506 481 507 0.92
Sequence Information
- Coding Sequence
- ATGGACTTCAGTGATGTATATAACTCtgatgtcagAGTGAAGGAGGAACCAAATGATTTTGCCCctattgaaaatgatgattaTCAGATAATTGACAATGCACACGATGCTAACACTGATGATCAATCCTTGCGATGTCTAGAAAATTTTACTCGTGGCCCTGACGATGTCAAAGTAGAATTCGAATGTAAGGACGAGAAGCTCGGCATTAACTTATTAGTAGTCAAGAAAATCGAGGACGATTATCCAGATCATTTGCAGCATATGGAAAATAGTTACAATAATCAAAcccaaaagaaaattaaaaaagaaattgaggacgaaataaaagaagaattgaATTCGGATGGTGAACTAAGTGATGCATttgatgcaaatgaaaaaacatttgctcaaaaaAGTTTATGCGAAACCCAAACTGATAAGGCACGCAATCGTACCAAATATCCATGTAATGTATGCGGtacaaaatttacacgaaaagGTAGTCTCAAGATCCACATCGATGCAGTTCATAATGGTGTCAAGCATACGTGCGTTACATGTCGAAAAACATTCACACTAAAATACactctcaaaattcacatcgattcagtacataatggtgttaaacatgattgtggtgtatgtggaaagacattcactcAAAAAGGAAAGCTCAAAAGTCACATCgctgcgatgcataatggtatggcaccAACATGcgaaatatgcggaaagaaatttcaaacgaaggCTAAACTCAAGattcacatcgattcagtacataatggtgttagacatgcgtgtggtgtatgtgaaaagacattcgcACAAAAAAGAGATCTCAACATTCACATCAACGCGATGCATAAAggtatggcacctacttgcgaaatatgcggaaagaaattctcaactAAGACTAAACTCAAACTCCACATGGATGCAGTGCATAATAAGATAACTCACGCATGTGATACATGTGGCAAAATATTTACGCTGAAAGATAATCTTAAgaaacacatcgatgcgatgcataaaggtatggcacctacttgTGAaatatgcgaaaagaaattcgcaACTGAGACTTCACTGAAGCTTCACATCGATACAGttcataatggtgttaaacatgcgtgtggAGTGTGTGGaaaaacatacacacaaaaaggagatctcaaaattcacatcgatgcgatgcataataaGATAACTCACGCATGTGATACATGTGGCAAAATATTTTCGCTGAAAGATAATCTTAAgaaacacatcgatgcgatgcataaaggTATGGCACCAACTTGCGAAgtgtgcggaaagacattctcacgaaagggtaatcttaaaaaacacatgaatTTGATGCATAATAAGATAACTTACGCATATAATACTTGCGGCAAGACATTTACTCAAAAGGACCGTCTTAAAACTCACATTAAAACGCAGCACGAAGACATTGCATGCGTTATCTgcggagaaaaatttaaacataggAAATATCTATACAGACACATCAAAAGTGAGCATGAGGGCAACACCCAAGCACGAGATTAA
- Protein Sequence
- MDFSDVYNSDVRVKEEPNDFAPIENDDYQIIDNAHDANTDDQSLRCLENFTRGPDDVKVEFECKDEKLGINLLVVKKIEDDYPDHLQHMENSYNNQTQKKIKKEIEDEIKEELNSDGELSDAFDANEKTFAQKSLCETQTDKARNRTKYPCNVCGTKFTRKGSLKIHIDAVHNGVKHTCVTCRKTFTLKYTLKIHIDSVHNGVKHDCGVCGKTFTQKGKLKSHIAAMHNGMAPTCEICGKKFQTKAKLKIHIDSVHNGVRHACGVCEKTFAQKRDLNIHINAMHKGMAPTCEICGKKFSTKTKLKLHMDAVHNKITHACDTCGKIFTLKDNLKKHIDAMHKGMAPTCEICEKKFATETSLKLHIDTVHNGVKHACGVCGKTYTQKGDLKIHIDAMHNKITHACDTCGKIFSLKDNLKKHIDAMHKGMAPTCEVCGKTFSRKGNLKKHMNLMHNKITYAYNTCGKTFTQKDRLKTHIKTQHEDIACVICGEKFKHRKYLYRHIKSEHEGNTQARD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485125;
- 90% Identity
- iTF_01485125;
- 80% Identity
- iTF_01485125;