Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: -
Assembly: GCA_000599845.3
Location: NW:416985-419001[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.77 13 6.0 0.7 8 23 160 176 155 176 0.91

2 14 1.3e-05 0.00022 21.0 0.6 1 23 181 204 181 204 0.98

3 14 4.5e-05 0.00073 19.4 2.9 1 23 209 232 209 232 0.91

4 14 2.6e-05 0.00043 20.1 1.4 1 23 237 260 237 260 0.93

5 14 5.4e-06 8.8e-05 22.3 0.6 1 23 265 288 265 288 0.92

6 14 8.4e-06 0.00014 21.6 2.9 1 23 293 316 293 316 0.95

7 14 0.00055 0.009 15.9 0.1 1 23 321 344 321 344 0.95

8 14 5.4e-06 8.8e-05 22.3 0.6 1 23 349 372 349 372 0.92

9 14 8.9e-07 1.4e-05 24.7 1.4 1 23 377 400 377 400 0.95

10 14 3e-05 0.00049 19.9 3.5 1 23 405 428 405 428 0.95

11 14 5.6e-07 9.2e-06 25.3 0.7 2 23 434 456 433 456 0.95

12 14 7.6e-05 0.0012 18.6 1.1 1 23 461 484 461 484 0.93

13 14 0.00013 0.002 17.9 0.8 1 23 489 512 489 512 0.96

14 14 2.5e-06 4.1e-05 23.3 0.2 1 23 517 540 517 540 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.77	13	6.0	0.7	8	23	160	176	155	176	0.91
2	14	1.3e-05	0.00022	21.0	0.6	1	23	181	204	181	204	0.98
3	14	4.5e-05	0.00073	19.4	2.9	1	23	209	232	209	232	0.91
4	14	2.6e-05	0.00043	20.1	1.4	1	23	237	260	237	260	0.93
5	14	5.4e-06	8.8e-05	22.3	0.6	1	23	265	288	265	288	0.92
6	14	8.4e-06	0.00014	21.6	2.9	1	23	293	316	293	316	0.95
7	14	0.00055	0.009	15.9	0.1	1	23	321	344	321	344	0.95
8	14	5.4e-06	8.8e-05	22.3	0.6	1	23	349	372	349	372	0.92
9	14	8.9e-07	1.4e-05	24.7	1.4	1	23	377	400	377	400	0.95
10	14	3e-05	0.00049	19.9	3.5	1	23	405	428	405	428	0.95
11	14	5.6e-07	9.2e-06	25.3	0.7	2	23	434	456	433	456	0.95
12	14	7.6e-05	0.0012	18.6	1.1	1	23	461	484	461	484	0.93
13	14	0.00013	0.002	17.9	0.8	1	23	489	512	489	512	0.96
14	14	2.5e-06	4.1e-05	23.3	0.2	1	23	517	540	517	540	0.94

Sequence Information

Coding Sequence: ATGGATTCCGgtaatttatttaactttaGCGGcagagtgaaagatGAACCTTGCGACGAGTCGCTGGATGAAAGTGATTATAAAATGAGTACCAATGCACCTGACGTTAAAGATTTTCCAGACTTCAAAGAATATTCAACGCTTCGAGAATGTAATGAAAATCGTGAAATCGAACgtgacgaaataaaaattgaatttgagtGTAAAGACATGAAGCCGAGCACGAATTTATTTGAAGTTACgaaaattgaagattattCTCAAAATCATTTGCAACATATAAAAAACAGCGACGATTATGCAGCTCAAAACATCATTCCAATAGGAACCGTGGACAAGgtgaaaaaagaagtgaatttgaatttcgattgTGAACtcggtgaaaaaaataagaatagaagagattcaaaaaagttaaactATACCAATACAATAAAAACTCACATCGACGTCACACGTGCATGCAATACACGTGAAAAGTTATTTACACAAAAGTtgaatctcaaaactcacactAATACGATGCACAAGGGTGCcacatatacatgtaatatttgcAGTAAGAATATCTCAACTaaaggtaatctcaaaacACACATCAACTCGGTTCACAGTAAAATAGTGCATTCGTGTAATTTATGcggaaagtttttttctcaaaaacggTATCTCAAAACCCATATTGATGACCTGCACAATGGGGTCACacatgaatgtgatatttgcgctAAGAAATTCACACAGAAAAATAGTCTCAAACGCCACATTGATTTGGTGCACAATGGTATCACTCACTCATGTGATGTATGCGGCAAGACACTTTCATCTAAAAGTGATCTCAAGAGGCACATCGATGCgttgcataatggtgtcactcatacatgtgacaattgcagaaagaaattcacaagcaagagtaatctcaaaatccacatagATTCGGTGCATAACGGTAAGAAACATACGTGTGACGCGTGTGGAAAGAAGTACGgacgaaaaattaatctcgCGGCCCACATCGATGTAGCACACAATGGTATCACTCACTCATGTGATGTATGCGGCAAGACACTTTCATCTAAAAGTGATCTCAAGAGGCACATCGATGCgttgcataatggtgtcactcACTCATGTGATTTATGTggcaagacattttcatttaaaagtgatctcaaaaagcacattGATGTCGCACATAATGGTGTTACTCactcatgtgatatttgcagaAAGAAATACTCAAGTAAAAGCcatctcaaaaatcacattgatGTCGCACATAATGGTGTCACTTCTACATGTGACtattgcggaaagaaattcacaACCAAGAGTAGTCTCAAAATGCATATAGATGTGGTGCATAACGGTAACAAACATACGTGCGATgtgtgcggaaaaaagtacggacgaaaatttaatttaaaactcCACATCGATGAGGTGCATAATGGCATCACTTATGCGTGtgatttatgtgaaaaaatgtataaaaatcgatCTGGTCTCTATAAACATGTTAAATCGTCGCATAATAGTACCACCCATGCATGTGAGATTTGTGGAAAGACGTTCGGACGAAAAATAAACCTCAAAGCTCATATTGATGTGGCACATACCTCAAGCACTATGACTggataa
Protein Sequence: MDSGNLFNFSGRVKDEPCDESLDESDYKMSTNAPDVKDFPDFKEYSTLRECNENREIERDEIKIEFECKDMKPSTNLFEVTKIEDYSQNHLQHIKNSDDYAAQNIIPIGTVDKVKKEVNLNFDCELGEKNKNRRDSKKLNYTNTIKTHIDVTRACNTREKLFTQKLNLKTHTNTMHKGATYTCNICSKNISTKGNLKTHINSVHSKIVHSCNLCGKFFSQKRYLKTHIDDLHNGVTHECDICAKKFTQKNSLKRHIDLVHNGITHSCDVCGKTLSSKSDLKRHIDALHNGVTHTCDNCRKKFTSKSNLKIHIDSVHNGKKHTCDACGKKYGRKINLAAHIDVAHNGITHSCDVCGKTLSSKSDLKRHIDALHNGVTHSCDLCGKTFSFKSDLKKHIDVAHNGVTHSCDICRKKYSSKSHLKNHIDVAHNGVTSTCDYCGKKFTTKSSLKMHIDVVHNGNKHTCDVCGKKYGRKFNLKLHIDEVHNGITYACDLCEKMYKNRSGLYKHVKSSHNSTTHACEICGKTFGRKINLKAHIDVAHTSSTMTG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01484925;
90% Identity: iTF_01484925;
80% Identity: iTF_01484925;