Tpre004067.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:416985-419001[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0058 0.43 10.1 6.8 17 44 181 205 167 205 0.89 2 13 0.41 31 4.2 0.5 18 37 210 226 208 236 0.75 3 13 0.088 6.5 6.3 1.2 18 43 238 260 232 261 0.88 4 13 0.017 1.3 8.6 0.7 19 43 267 288 264 289 0.88 5 13 0.04 3 7.4 2.0 18 44 294 317 291 317 0.94 6 13 0.077 5.7 6.5 0.7 15 43 319 344 318 345 0.86 7 13 0.017 1.3 8.6 0.7 19 43 351 372 348 373 0.88 8 13 0.064 4.8 6.8 0.3 19 44 379 401 376 401 0.91 9 13 0.058 4.3 6.9 4.0 19 44 407 429 404 429 0.90 10 13 0.019 1.4 8.5 0.5 18 43 434 456 432 457 0.83 11 13 0.035 2.6 7.6 1.0 15 43 459 484 453 485 0.86 12 13 0.03 2.2 7.9 1.0 19 44 491 513 488 513 0.93 13 13 0.017 1.3 8.6 0.4 18 43 518 540 513 541 0.87
Sequence Information
- Coding Sequence
- ATGGATTCCGgtaatttatttaactttaGCGGcagagtgaaagatGAACCTTGCGACGAGTCGCTGGATGAAAGTGATTATAAAATGAGTACCAATGCACCTGACGTTAAAGATTTTCCAGACTTCAAAGAATATTCAACGCTTCGAGAATGTAATGAAAATCGTGAAATCGAACgtgacgaaataaaaattgaatttgagtGTAAAGACATGAAGCCGAGCACGAATTTATTTGAAGTTACgaaaattgaagattattCTCAAAATCATTTGCAACATATAAAAAACAGCGACGATTATGCAGCTCAAAACATCATTCCAATAGGAACCGTGGACAAGgtgaaaaaagaagtgaatttgaatttcgattgTGAACtcggtgaaaaaaataagaatagaagagattcaaaaaagttaaactATACCAATACAATAAAAACTCACATCGACGTCACACGTGCATGCAATACACGTGAAAAGTTATTTACACAAAAGTtgaatctcaaaactcacactAATACGATGCACAAGGGTGCcacatatacatgtaatatttgcAGTAAGAATATCTCAACTaaaggtaatctcaaaacACACATCAACTCGGTTCACAGTAAAATAGTGCATTCGTGTAATTTATGcggaaagtttttttctcaaaaacggTATCTCAAAACCCATATTGATGACCTGCACAATGGGGTCACacatgaatgtgatatttgcgctAAGAAATTCACACAGAAAAATAGTCTCAAACGCCACATTGATTTGGTGCACAATGGTATCACTCACTCATGTGATGTATGCGGCAAGACACTTTCATCTAAAAGTGATCTCAAGAGGCACATCGATGCgttgcataatggtgtcactcatacatgtgacaattgcagaaagaaattcacaagcaagagtaatctcaaaatccacatagATTCGGTGCATAACGGTAAGAAACATACGTGTGACGCGTGTGGAAAGAAGTACGgacgaaaaattaatctcgCGGCCCACATCGATGTAGCACACAATGGTATCACTCACTCATGTGATGTATGCGGCAAGACACTTTCATCTAAAAGTGATCTCAAGAGGCACATCGATGCgttgcataatggtgtcactcACTCATGTGATTTATGTggcaagacattttcatttaaaagtgatctcaaaaagcacattGATGTCGCACATAATGGTGTTACTCactcatgtgatatttgcagaAAGAAATACTCAAGTAAAAGCcatctcaaaaatcacattgatGTCGCACATAATGGTGTCACTTCTACATGTGACtattgcggaaagaaattcacaACCAAGAGTAGTCTCAAAATGCATATAGATGTGGTGCATAACGGTAACAAACATACGTGCGATgtgtgcggaaaaaagtacggacgaaaatttaatttaaaactcCACATCGATGAGGTGCATAATGGCATCACTTATGCGTGtgatttatgtgaaaaaatgtataaaaatcgatCTGGTCTCTATAAACATGTTAAATCGTCGCATAATAGTACCACCCATGCATGTGAGATTTGTGGAAAGACGTTCGGACGAAAAATAAACCTCAAAGCTCATATTGATGTGGCACATACCTCAAGCACTATGACTggataa
- Protein Sequence
- MDSGNLFNFSGRVKDEPCDESLDESDYKMSTNAPDVKDFPDFKEYSTLRECNENREIERDEIKIEFECKDMKPSTNLFEVTKIEDYSQNHLQHIKNSDDYAAQNIIPIGTVDKVKKEVNLNFDCELGEKNKNRRDSKKLNYTNTIKTHIDVTRACNTREKLFTQKLNLKTHTNTMHKGATYTCNICSKNISTKGNLKTHINSVHSKIVHSCNLCGKFFSQKRYLKTHIDDLHNGVTHECDICAKKFTQKNSLKRHIDLVHNGITHSCDVCGKTLSSKSDLKRHIDALHNGVTHTCDNCRKKFTSKSNLKIHIDSVHNGKKHTCDACGKKYGRKINLAAHIDVAHNGITHSCDVCGKTLSSKSDLKRHIDALHNGVTHSCDLCGKTFSFKSDLKKHIDVAHNGVTHSCDICRKKYSSKSHLKNHIDVAHNGVTSTCDYCGKKFTTKSSLKMHIDVVHNGNKHTCDVCGKKYGRKFNLKLHIDEVHNGITYACDLCEKMYKNRSGLYKHVKSSHNSTTHACEICGKTFGRKINLKAHIDVAHTSSTMTG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485122;
- 90% Identity
- iTF_01485122;
- 80% Identity
- iTF_01485122;