Tpre003828.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:190121-192045[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0035 0.058 13.4 0.5 5 23 137 156 136 156 0.92 2 13 0.00012 0.002 18.0 2.0 1 20 161 180 161 184 0.88 3 13 3.8e-06 6.1e-05 22.7 0.2 3 23 191 212 190 212 0.94 4 13 6.8e-06 0.00011 21.9 3.3 1 23 217 240 217 240 0.94 5 13 5.4e-06 8.9e-05 22.2 1.6 1 23 245 268 245 268 0.93 6 13 8.1e-05 0.0013 18.5 0.9 1 23 273 296 273 296 0.92 7 13 6.8e-06 0.00011 21.9 3.3 1 23 301 324 301 324 0.94 8 13 1.5e-05 0.00024 20.9 1.0 1 23 329 352 329 352 0.93 9 13 3.1e-06 5.1e-05 23.0 0.9 1 23 357 380 357 380 0.89 10 13 6.5e-08 1.1e-06 28.3 0.3 1 23 385 408 385 408 0.96 11 13 1.1e-06 1.8e-05 24.4 3.8 1 23 413 436 413 436 0.93 12 13 1.3e-05 0.00021 21.1 0.6 1 23 441 464 441 464 0.97 13 13 5.1e-07 8.3e-06 25.5 1.2 1 22 469 490 469 493 0.90
Sequence Information
- Coding Sequence
- ATGAAGCCCAGTTGTTCGTTCGATTTTCCTctcaaGATAAAAGAGGAACCCAGTGATGCGCCACTCATTGAGAATGATGACGAGATACCTGATgctaaacattttcaattcttcGGATTTCCGCTAGAAAATTCGGCGCTTCAAGAACGTAACGGAAATCACAAAAGTAAACTTGACGACTTGGCAATTGAATTTGAGTGTAGAGACGCGAAGCGTATCGCGGATTTATTAGAGGTGACGAAAGTTGAAGATTGTACCCAAAATCGATTGCAGAATAAGGAAGATGAAAACAGTCATCGAACTCGAAATAAAATCAACACGAGAGCGGTAAAGAAAGAACCATTCGTGGACGATGCGAAACAATCGATTGGACATGGACTCGAAGCTGTTATCGACAATGCGTATGAGATATGTAGAAAGAAATGTTCGAACCAGAGTAATCTCAACATCCACATCGATAAtttgcacaatggtgtcagacatgcatgtgatatttgtgacAAGAAATTCAAGAGTAAAAGCTATCTCAAGTACCACAATGATTGGGTGCATAATAAAGTCAGACAAGCATGCGATGTATGCGATAAGACATTCACACGAAAGGATACTCTTAAAGTCCACATCGTCtcggtgcacaatggtgtcaaacatgcatgtgatatttgcgaaaagaaattttcaacgaagactcatctcaaaactcacatgaATGGGGCGCACATCGGCGTCACTCATGCATGCGATATgtgcgggaaaaaattcacaacgAAAACTTATCTCAAACGTCACGTGGATGtggtgcacaatggtgtcaaacatgcatgtgatGTATGCCAAAAGATATTCACACGAAAGGATACTCTCAAAATCCATACCGTCTCGGTACACAATGGTGtcaaacatgcatgtgatatttgcgaaaagaaattttcaacgaagactcatctcaaaactcacatgaATGGGGCGCACATCGGTGTCGCTCATGCATGTGatgtatgccaaaagacattcacacgaAAGGGTACTCTTAAAATCCACATCGTCTcgatgcacaatggtgtcagacatgcatgcgatatttgcgggaaaaaattcacaacgaaaactaatctcaaaactcacgtgGATgcggtgcacaatggtgttaaatatgcatgtaatatttgcggaaagacattcacacaaaagtCGGCTCTCAATACACACATCTCTTCGGTGCACGATGGTGTCAAACATGCATGTAATTTTTGCGGAAAGTCATTCAAACAAAAGAGTCATCTTAAAACCCACATTAACGCTGCGCATAAAGGTATTACTTATCCATGCAATATATGTGAAAAAGCATACCAGCGTCAAACTGATCTCCGTCGACACGTTAAATCGTCGCATACAAATAACACTCACACGTGTGATAAATGCGGtaaatcattttcacaaaagaaTAATCTTAGGGCTCACATAGTTATGGCGCGTCACTGA
- Protein Sequence
- MKPSCSFDFPLKIKEEPSDAPLIENDDEIPDAKHFQFFGFPLENSALQERNGNHKSKLDDLAIEFECRDAKRIADLLEVTKVEDCTQNRLQNKEDENSHRTRNKINTRAVKKEPFVDDAKQSIGHGLEAVIDNAYEICRKKCSNQSNLNIHIDNLHNGVRHACDICDKKFKSKSYLKYHNDWVHNKVRQACDVCDKTFTRKDTLKVHIVSVHNGVKHACDICEKKFSTKTHLKTHMNGAHIGVTHACDMCGKKFTTKTYLKRHVDVVHNGVKHACDVCQKIFTRKDTLKIHTVSVHNGVKHACDICEKKFSTKTHLKTHMNGAHIGVAHACDVCQKTFTRKGTLKIHIVSMHNGVRHACDICGKKFTTKTNLKTHVDAVHNGVKYACNICGKTFTQKSALNTHISSVHDGVKHACNFCGKSFKQKSHLKTHINAAHKGITYPCNICEKAYQRQTDLRRHVKSSHTNNTHTCDKCGKSFSQKNNLRAHIVMARH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01484911;
- 90% Identity
- iTF_01484911;
- 80% Identity
- iTF_01484911;