Tpre003828.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:190121-192045[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.4 3.3e+02 0.9 2.2 19 33 163 174 151 185 0.83 2 12 0.041 3 7.4 0.1 19 44 191 213 183 213 0.90 3 12 0.04 3 7.4 2.7 18 43 218 240 215 241 0.90 4 12 0.25 19 4.9 0.2 19 43 247 268 245 269 0.86 5 12 0.35 26 4.4 0.5 18 39 274 292 270 301 0.71 6 12 0.033 2.4 7.7 2.5 18 43 302 324 297 325 0.90 7 12 0.036 2.7 7.6 0.9 19 44 331 353 328 353 0.89 8 12 0.0054 0.4 10.2 0.8 19 43 359 380 356 381 0.91 9 12 0.0026 0.2 11.2 0.6 18 43 386 408 382 409 0.86 10 12 0.0057 0.43 10.1 2.6 18 44 414 437 409 437 0.91 11 12 0.00047 0.035 13.6 0.4 19 43 443 464 441 465 0.94 12 12 0.015 1.1 8.8 2.0 14 40 466 489 462 493 0.84
Sequence Information
- Coding Sequence
- ATGAAGCCCAGTTGTTCGTTCGATTTTCCTctcaaGATAAAAGAGGAACCCAGTGATGCGCCACTCATTGAGAATGATGACGAGATACCTGATgctaaacattttcaattcttcGGATTTCCGCTAGAAAATTCGGCGCTTCAAGAACGTAACGGAAATCACAAAAGTAAACTTGACGACTTGGCAATTGAATTTGAGTGTAGAGACGCGAAGCGTATCGCGGATTTATTAGAGGTGACGAAAGTTGAAGATTGTACCCAAAATCGATTGCAGAATAAGGAAGATGAAAACAGTCATCGAACTCGAAATAAAATCAACACGAGAGCGGTAAAGAAAGAACCATTCGTGGACGATGCGAAACAATCGATTGGACATGGACTCGAAGCTGTTATCGACAATGCGTATGAGATATGTAGAAAGAAATGTTCGAACCAGAGTAATCTCAACATCCACATCGATAAtttgcacaatggtgtcagacatgcatgtgatatttgtgacAAGAAATTCAAGAGTAAAAGCTATCTCAAGTACCACAATGATTGGGTGCATAATAAAGTCAGACAAGCATGCGATGTATGCGATAAGACATTCACACGAAAGGATACTCTTAAAGTCCACATCGTCtcggtgcacaatggtgtcaaacatgcatgtgatatttgcgaaaagaaattttcaacgaagactcatctcaaaactcacatgaATGGGGCGCACATCGGCGTCACTCATGCATGCGATATgtgcgggaaaaaattcacaacgAAAACTTATCTCAAACGTCACGTGGATGtggtgcacaatggtgtcaaacatgcatgtgatGTATGCCAAAAGATATTCACACGAAAGGATACTCTCAAAATCCATACCGTCTCGGTACACAATGGTGtcaaacatgcatgtgatatttgcgaaaagaaattttcaacgaagactcatctcaaaactcacatgaATGGGGCGCACATCGGTGTCGCTCATGCATGTGatgtatgccaaaagacattcacacgaAAGGGTACTCTTAAAATCCACATCGTCTcgatgcacaatggtgtcagacatgcatgcgatatttgcgggaaaaaattcacaacgaaaactaatctcaaaactcacgtgGATgcggtgcacaatggtgttaaatatgcatgtaatatttgcggaaagacattcacacaaaagtCGGCTCTCAATACACACATCTCTTCGGTGCACGATGGTGTCAAACATGCATGTAATTTTTGCGGAAAGTCATTCAAACAAAAGAGTCATCTTAAAACCCACATTAACGCTGCGCATAAAGGTATTACTTATCCATGCAATATATGTGAAAAAGCATACCAGCGTCAAACTGATCTCCGTCGACACGTTAAATCGTCGCATACAAATAACACTCACACGTGTGATAAATGCGGtaaatcattttcacaaaagaaTAATCTTAGGGCTCACATAGTTATGGCGCGTCACTGA
- Protein Sequence
- MKPSCSFDFPLKIKEEPSDAPLIENDDEIPDAKHFQFFGFPLENSALQERNGNHKSKLDDLAIEFECRDAKRIADLLEVTKVEDCTQNRLQNKEDENSHRTRNKINTRAVKKEPFVDDAKQSIGHGLEAVIDNAYEICRKKCSNQSNLNIHIDNLHNGVRHACDICDKKFKSKSYLKYHNDWVHNKVRQACDVCDKTFTRKDTLKVHIVSVHNGVKHACDICEKKFSTKTHLKTHMNGAHIGVTHACDMCGKKFTTKTYLKRHVDVVHNGVKHACDVCQKIFTRKDTLKIHTVSVHNGVKHACDICEKKFSTKTHLKTHMNGAHIGVAHACDVCQKTFTRKGTLKIHIVSMHNGVRHACDICGKKFTTKTNLKTHVDAVHNGVKYACNICGKTFTQKSALNTHISSVHDGVKHACNFCGKSFKQKSHLKTHINAAHKGITYPCNICEKAYQRQTDLRRHVKSSHTNNTHTCDKCGKSFSQKNNLRAHIVMARH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485113;
- 90% Identity
- iTF_01485113;
- 80% Identity
- iTF_01485113;