Tpre010275.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:4542-6326[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 7.4e-06 0.00012 21.8 0.4 3 23 168 189 167 189 0.95 2 13 1.6e-06 2.5e-05 23.9 1.2 1 23 194 217 194 217 0.95 3 13 3e-05 0.00049 19.9 0.1 1 23 222 245 222 245 0.96 4 13 2.8e-06 4.5e-05 23.2 1.1 1 23 250 273 250 273 0.94 5 13 3.2e-05 0.00052 19.8 3.8 1 23 278 301 278 301 0.94 6 13 1e-05 0.00017 21.4 1.6 1 23 306 329 306 329 0.92 7 13 6.4e-07 1e-05 25.2 2.3 1 23 334 357 334 358 0.93 8 13 3.3e-05 0.00054 19.8 1.8 1 23 362 385 362 385 0.95 9 13 8e-06 0.00013 21.7 0.8 1 23 390 413 390 413 0.91 10 13 5e-06 8.2e-05 22.3 0.7 1 23 418 441 418 441 0.94 11 13 7.5e-06 0.00012 21.8 1.2 1 23 446 469 446 469 0.92 12 13 1.3e-05 0.00021 21.0 1.7 3 23 476 497 474 497 0.95 13 13 5.7e-06 9.3e-05 22.2 1.8 1 23 502 525 502 526 0.94
Sequence Information
- Coding Sequence
- ATGGAATCGAGCAATGTATTAAATCCTACCGCCagagtgaaagatGAGCCTCTTGATGAACCTTtcaatgatgataatgattatGAAATAACTGACATTACATCTACAGTTACTCAACATATTAAGTACGAAAGTTTTTGgcaagaaaattcaacccAAGAGCTTCTTCAAGAATGCGACGAAAATCACGAAAATGAACTTGGCGACGTACAAATCGAGTTGGAATGTACAGACATGAAGCCCAATTTATTGGCCAAAATTGAAGATTTCTCTACAAATCACGGGCAGCATAGTGATGATTATAAAACCGGAAGCATTATTAAACTAGAAATTGTCGGGACAgtgaagaaagaaatttttagcgaaaaagaaagtgaTTTGAATTTAGGATGTGGACTCAgcgcgaaaaatgaaaaaggatGTGTTTCAAAAGAGATTAACTATAATCATAGGCTAAAACCTCAGACTGAATCAGTCCGTATTGGCAAAATTACAcctgcatgtgatatttgcggaaaagtGTTCAAACTTAGAGGTCATCTCAATAggcacatcgattcggtgcatcgtAAAATCACGCATCCATGCGATATATGtcaaaagacattcacacagaAAACgaatctcaaaatccacatcgattctGTACATCGTAAAATCACTTATCCATGCGGTATATGCCAGAAGACCTACCCAGACAAGATTagtctcaaaaaacacatcgattcggtgcataatggtgtcagacatgcatgcgatatatgccaaaCGACATTCTCAGACAAGAGTAGTCTAAAGAggcacatcgattcggtgcacaagCGAGTCAGACATGCATGTGACatttgtgaaaagacattcacacataAAAGTTATCTCAAAACCCACACCGAATCGGTGCATTATGGTatttcacatgcatgtgatgtttgtgaaaagacattcactcAAAAAGGTCATCTTAAAAACCACATCGATtgggtgcataatggtgtttcacatgcatgtgatatttgtgggAAGACATTCACTCGGAAAGATAATCTCAAAAGCCACGTCGAATCGatacatcataaaattatgcaTCCTTGTAATAAATGCCCAAAGACATTCTCAAATAAGGGTAGCCAAAAAAggcacatcgattcggtgcacaagCGAGTCAGACATGCATGTGAcatttgtggaaagacattcactcAAAAAGGTTTTCTTAAAAcccacatcgatgcgatgcataatagtgtcagacatgcatgcgatatttgcgaaaagaagtttacACAAAATAGTTCTCTCAAAATACATATCGCATCGGAGCATAATGGTGTCAGGCATGAATGTGATatgtgcacaaaaaaatttacttcgaAAAGTAGTCTTAAAGCCCATATCGATGCGGAGCACAATGGAATCACCCTCGCATGTGATTtctgtggaaaaaaatttaaatatcaaacTCAACTCCGTAAGCATGTCAAATCGTCGCATAGTGGTATCATACATTCATGCGAGAcatgcggcaagacatttgGACAGAAAAGAAATCTCAGAGCCCACATCGATGTGGCGCATCACTCACGCAATCAGACctaa
- Protein Sequence
- MESSNVLNPTARVKDEPLDEPFNDDNDYEITDITSTVTQHIKYESFWQENSTQELLQECDENHENELGDVQIELECTDMKPNLLAKIEDFSTNHGQHSDDYKTGSIIKLEIVGTVKKEIFSEKESDLNLGCGLSAKNEKGCVSKEINYNHRLKPQTESVRIGKITPACDICGKVFKLRGHLNRHIDSVHRKITHPCDICQKTFTQKTNLKIHIDSVHRKITYPCGICQKTYPDKISLKKHIDSVHNGVRHACDICQTTFSDKSSLKRHIDSVHKRVRHACDICEKTFTHKSYLKTHTESVHYGISHACDVCEKTFTQKGHLKNHIDWVHNGVSHACDICGKTFTRKDNLKSHVESIHHKIMHPCNKCPKTFSNKGSQKRHIDSVHKRVRHACDICGKTFTQKGFLKTHIDAMHNSVRHACDICEKKFTQNSSLKIHIASEHNGVRHECDMCTKKFTSKSSLKAHIDAEHNGITLACDFCGKKFKYQTQLRKHVKSSHSGIIHSCETCGKTFGQKRNLRAHIDVAHHSRNQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01484948;
- 90% Identity
- iTF_01484948;
- 80% Identity
- iTF_01484948;