Tpre010275.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:4542-6326[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.49 37 3.9 0.4 19 43 168 189 163 190 0.81 2 13 0.0077 0.57 9.7 0.6 19 44 196 218 192 218 0.95 3 13 0.34 25 4.5 0.1 19 44 224 246 221 246 0.85 4 13 0.025 1.8 8.1 0.4 19 44 252 274 248 274 0.93 5 13 0.64 48 3.6 1.5 19 40 280 298 276 302 0.76 6 13 1.5 1.1e+02 2.4 0.5 19 37 308 323 305 330 0.74 7 13 0.00097 0.072 12.6 0.4 19 43 336 357 332 358 0.93 8 13 0.17 13 5.4 1.6 19 44 364 386 358 386 0.80 9 13 0.3 22 4.7 1.9 17 43 390 413 378 414 0.71 10 13 0.11 7.9 6.1 0.7 18 44 419 442 409 442 0.86 11 13 0.16 12 5.5 0.7 18 43 447 469 444 470 0.89 12 13 0.0029 0.21 11.1 0.4 19 44 476 498 473 498 0.93 13 13 0.77 58 3.3 1.5 19 43 504 525 501 526 0.89
Sequence Information
- Coding Sequence
- ATGGAATCGAGCAATGTATTAAATCCTACCGCCagagtgaaagatGAGCCTCTTGATGAACCTTtcaatgatgataatgattatGAAATAACTGACATTACATCTACAGTTACTCAACATATTAAGTACGAAAGTTTTTGgcaagaaaattcaacccAAGAGCTTCTTCAAGAATGCGACGAAAATCACGAAAATGAACTTGGCGACGTACAAATCGAGTTGGAATGTACAGACATGAAGCCCAATTTATTGGCCAAAATTGAAGATTTCTCTACAAATCACGGGCAGCATAGTGATGATTATAAAACCGGAAGCATTATTAAACTAGAAATTGTCGGGACAgtgaagaaagaaatttttagcgaaaaagaaagtgaTTTGAATTTAGGATGTGGACTCAgcgcgaaaaatgaaaaaggatGTGTTTCAAAAGAGATTAACTATAATCATAGGCTAAAACCTCAGACTGAATCAGTCCGTATTGGCAAAATTACAcctgcatgtgatatttgcggaaaagtGTTCAAACTTAGAGGTCATCTCAATAggcacatcgattcggtgcatcgtAAAATCACGCATCCATGCGATATATGtcaaaagacattcacacagaAAACgaatctcaaaatccacatcgattctGTACATCGTAAAATCACTTATCCATGCGGTATATGCCAGAAGACCTACCCAGACAAGATTagtctcaaaaaacacatcgattcggtgcataatggtgtcagacatgcatgcgatatatgccaaaCGACATTCTCAGACAAGAGTAGTCTAAAGAggcacatcgattcggtgcacaagCGAGTCAGACATGCATGTGACatttgtgaaaagacattcacacataAAAGTTATCTCAAAACCCACACCGAATCGGTGCATTATGGTatttcacatgcatgtgatgtttgtgaaaagacattcactcAAAAAGGTCATCTTAAAAACCACATCGATtgggtgcataatggtgtttcacatgcatgtgatatttgtgggAAGACATTCACTCGGAAAGATAATCTCAAAAGCCACGTCGAATCGatacatcataaaattatgcaTCCTTGTAATAAATGCCCAAAGACATTCTCAAATAAGGGTAGCCAAAAAAggcacatcgattcggtgcacaagCGAGTCAGACATGCATGTGAcatttgtggaaagacattcactcAAAAAGGTTTTCTTAAAAcccacatcgatgcgatgcataatagtgtcagacatgcatgcgatatttgcgaaaagaagtttacACAAAATAGTTCTCTCAAAATACATATCGCATCGGAGCATAATGGTGTCAGGCATGAATGTGATatgtgcacaaaaaaatttacttcgaAAAGTAGTCTTAAAGCCCATATCGATGCGGAGCACAATGGAATCACCCTCGCATGTGATTtctgtggaaaaaaatttaaatatcaaacTCAACTCCGTAAGCATGTCAAATCGTCGCATAGTGGTATCATACATTCATGCGAGAcatgcggcaagacatttgGACAGAAAAGAAATCTCAGAGCCCACATCGATGTGGCGCATCACTCACGCAATCAGACctaa
- Protein Sequence
- MESSNVLNPTARVKDEPLDEPFNDDNDYEITDITSTVTQHIKYESFWQENSTQELLQECDENHENELGDVQIELECTDMKPNLLAKIEDFSTNHGQHSDDYKTGSIIKLEIVGTVKKEIFSEKESDLNLGCGLSAKNEKGCVSKEINYNHRLKPQTESVRIGKITPACDICGKVFKLRGHLNRHIDSVHRKITHPCDICQKTFTQKTNLKIHIDSVHRKITYPCGICQKTYPDKISLKKHIDSVHNGVRHACDICQTTFSDKSSLKRHIDSVHKRVRHACDICEKTFTHKSYLKTHTESVHYGISHACDVCEKTFTQKGHLKNHIDWVHNGVSHACDICGKTFTRKDNLKSHVESIHHKIMHPCNKCPKTFSNKGSQKRHIDSVHKRVRHACDICGKTFTQKGFLKTHIDAMHNSVRHACDICEKKFTQNSSLKIHIASEHNGVRHECDMCTKKFTSKSSLKAHIDAEHNGITLACDFCGKKFKYQTQLRKHVKSSHSGIIHSCETCGKTFGQKRNLRAHIDVAHHSRNQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485110;
- 90% Identity
- iTF_01485110;
- 80% Identity
- iTF_01485110;