Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: -
Assembly: GCA_000599845.3
Location: NW:173626-175718[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 4.4 73 3.6 0.4 8 22 137 151 136 151 0.83

2 15 8.2e-06 0.00013 21.7 2.1 1 23 158 181 158 182 0.97

3 15 2.1e-06 3.4e-05 23.6 0.4 1 23 186 209 186 209 0.94

4 15 1.3e-06 2.1e-05 24.2 0.5 1 23 214 237 214 237 0.95

5 15 1.9e-05 0.00031 20.5 3.7 1 23 242 265 242 265 0.91

6 15 7.2e-07 1.2e-05 25.0 0.9 1 23 270 293 270 293 0.94

7 15 3.9e-06 6.4e-05 22.7 1.6 1 23 298 321 298 321 0.93

8 15 0.014 0.23 11.5 0.4 1 23 326 349 326 349 0.92

9 15 1.1e-06 1.7e-05 24.5 0.7 1 23 354 377 354 377 0.95

10 15 0.00017 0.0028 17.5 3.6 1 23 382 405 382 405 0.95

11 15 1.3e-05 0.00021 21.1 2.8 1 23 410 433 410 433 0.94

12 15 1.4e-05 0.00023 20.9 4.1 1 23 438 461 438 462 0.94

13 15 2.6e-06 4.3e-05 23.2 1.4 1 23 466 489 466 489 0.94

14 15 0.00038 0.0061 16.4 0.8 1 23 494 517 494 517 0.92

15 15 2.6e-05 0.00042 20.1 2.4 1 23 522 545 522 545 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	4.4	73	3.6	0.4	8	22	137	151	136	151	0.83
2	15	8.2e-06	0.00013	21.7	2.1	1	23	158	181	158	182	0.97
3	15	2.1e-06	3.4e-05	23.6	0.4	1	23	186	209	186	209	0.94
4	15	1.3e-06	2.1e-05	24.2	0.5	1	23	214	237	214	237	0.95
5	15	1.9e-05	0.00031	20.5	3.7	1	23	242	265	242	265	0.91
6	15	7.2e-07	1.2e-05	25.0	0.9	1	23	270	293	270	293	0.94
7	15	3.9e-06	6.4e-05	22.7	1.6	1	23	298	321	298	321	0.93
8	15	0.014	0.23	11.5	0.4	1	23	326	349	326	349	0.92
9	15	1.1e-06	1.7e-05	24.5	0.7	1	23	354	377	354	377	0.95
10	15	0.00017	0.0028	17.5	3.6	1	23	382	405	382	405	0.95
11	15	1.3e-05	0.00021	21.1	2.8	1	23	410	433	410	433	0.94
12	15	1.4e-05	0.00023	20.9	4.1	1	23	438	461	438	462	0.94
13	15	2.6e-06	4.3e-05	23.2	1.4	1	23	466	489	466	489	0.94
14	15	0.00038	0.0061	16.4	0.8	1	23	494	517	494	517	0.92
15	15	2.6e-05	0.00042	20.1	2.4	1	23	522	545	522	545	0.95

Sequence Information

Coding Sequence: ATGAAAGAGGAACCTAGTGGCGAGTGCCGTAGTGAAAATAATTCGGAGATGGTGGATGAAAAGCCCGATCTTAAAAACTATCAACCATTTCCAccagaaaattcaGTCCATACCTTTCGAAAAAGTGACTTGAATCATCCACGTGAATTTAATGACGATGTGGAAATAGTCGTTGAGTGTGAAGACGTCAAGCCCAACATTAATTTATTAGCAGttaagaaaattgaagaagatTCTCAAAATGGCTTGAAAGACATGGAGTACAATAATGTTTATGCAACTCAAAATATGATTAAAATGGAACCCACGGAGGAAGTACAACAGGCATCTTTTGTGAACACCGTAGAAGAATTAACTTTGAATTCAGACTGTAAACGTGGcgagcaaaataaaacaagaaaaataacgaaagAGTTGAGCAacgaacataacctcaaaagaCACCAAAGTACGGTGCGTAATGATCCAACTTACATGTGTGAAATATGCGGAAAATATTTCGCACATAAGGCAAGTTTGGACAGGCATATCAAATCAATACATCATGGTATTACCCActcatgtgatatatgcggaaagtcTTTTACTCAAAAAAGTTGGGTCAAAGTCCACATTAATGCAGTCCACAAGGGTTTCAcatatgcatgtgatatatgccaaaagacattctcataTAAGAACAATCTcgaaaaacacatcgattcggtgcataatggtgttgGACATGaatgcgatatatgccaaaagacattctcacaCAAGGGTTatctaaaaaaacatattgatTTCGTGCACAATCAAGTCcgacatgcatgtgatatatgccaaaagacgtTCACAACGAAAgataatctcaaaatccacatcgaatCGGTGCATCAAAAAATCACGCATccatgtgatatatgccaaaagaaattctcaaccAAGAGTTATCTCAGAAATCACATTggttcggtgcataatggtgtcagaCATGCTTGCGACATTTGCGGAAATGTGTATAAACTAAGAATTGGTTTCAAACGCCACATGGATTTGGTGCATAATCATGTCAGACACGAATGCGAtgtttgcggaaagaaattcgtacaaaaaggtaatctcaaaacccacatcgattcagtgcataataaaatcatgcaCACATGTGACagatgccaaaagacattctcacaAAAAGGTTATTTCAAAActcacatcgattcagtgcataatggtgtccgTCATGCATGCGACatttgcggaaagaagttCACAGAGAAGAAACATCTTAAAaatcacatcgattcggtgcataatggtgtctgtcatgcatgtgatatttgcgaaaagacattcacacagaAGGGTcatctcaaaacccacatcgagTCGGTACATCATAAAATTACGCACCCATGTGAtaaatgccaaaagacattctcagacaAGAGTGGTCTCAGAAAGCACATCgtttcggtgcataatggtgtcagaCATGCTTGCGACATTTGCGGAAATGTGTATAAACGAAGAATTAGTTTCAAACGCCACATGGATTTGGTGCATAACGATGTcagacatgcatgtgatacTTGTGGAAatacattcacacaaaaaggtcatctcaaaattcatatCAATAGGGTGCATAGCTGA
Protein Sequence: MKEEPSGECRSENNSEMVDEKPDLKNYQPFPPENSVHTFRKSDLNHPREFNDDVEIVVECEDVKPNINLLAVKKIEEDSQNGLKDMEYNNVYATQNMIKMEPTEEVQQASFVNTVEELTLNSDCKRGEQNKTRKITKELSNEHNLKRHQSTVRNDPTYMCEICGKYFAHKASLDRHIKSIHHGITHSCDICGKSFTQKSWVKVHINAVHKGFTYACDICQKTFSYKNNLEKHIDSVHNGVGHECDICQKTFSHKGYLKKHIDFVHNQVRHACDICQKTFTTKDNLKIHIESVHQKITHPCDICQKKFSTKSYLRNHIGSVHNGVRHACDICGNVYKLRIGFKRHMDLVHNHVRHECDVCGKKFVQKGNLKTHIDSVHNKIMHTCDRCQKTFSQKGYFKTHIDSVHNGVRHACDICGKKFTEKKHLKNHIDSVHNGVCHACDICEKTFTQKGHLKTHIESVHHKITHPCDKCQKTFSDKSGLRKHIVSVHNGVRHACDICGNVYKRRISFKRHMDLVHNDVRHACDTCGNTFTQKGHLKIHINRVHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01484988;
90% Identity: iTF_01484988;
80% Identity: iTF_01484988;