Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: -
Assembly: GCA_000599845.3
Location: NW:1063102-1065581[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.87 14 5.9 0.4 8 21 150 163 149 164 0.89

2 13 6.3e-07 1e-05 25.2 2.8 1 23 171 194 171 194 0.96

3 13 9.2e-06 0.00015 21.5 1.0 3 23 201 222 200 222 0.95

4 13 2.2e-05 0.00035 20.4 1.8 1 23 227 250 227 250 0.92

5 13 3.5e-06 5.7e-05 22.8 1.6 1 23 255 278 255 278 0.97

6 13 9.1e-08 1.5e-06 27.8 0.4 3 23 285 306 284 306 0.97

7 13 4e-06 6.5e-05 22.7 0.7 2 23 312 334 311 334 0.95

8 13 4.7e-05 0.00076 19.3 3.0 1 23 339 362 339 362 0.95

9 13 3.3e-07 5.5e-06 26.0 1.6 1 23 367 390 367 390 0.96

10 13 9.3e-06 0.00015 21.5 1.5 1 23 395 418 395 418 0.94

11 13 9.7e-08 1.6e-06 27.7 2.0 1 23 423 446 423 446 0.95

12 13 4.6e-07 7.5e-06 25.6 0.2 1 23 451 474 451 474 0.96

13 13 1.1e-05 0.00019 21.2 5.8 1 23 479 502 479 502 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.87	14	5.9	0.4	8	21	150	163	149	164	0.89
2	13	6.3e-07	1e-05	25.2	2.8	1	23	171	194	171	194	0.96
3	13	9.2e-06	0.00015	21.5	1.0	3	23	201	222	200	222	0.95
4	13	2.2e-05	0.00035	20.4	1.8	1	23	227	250	227	250	0.92
5	13	3.5e-06	5.7e-05	22.8	1.6	1	23	255	278	255	278	0.97
6	13	9.1e-08	1.5e-06	27.8	0.4	3	23	285	306	284	306	0.97
7	13	4e-06	6.5e-05	22.7	0.7	2	23	312	334	311	334	0.95
8	13	4.7e-05	0.00076	19.3	3.0	1	23	339	362	339	362	0.95
9	13	3.3e-07	5.5e-06	26.0	1.6	1	23	367	390	367	390	0.96
10	13	9.3e-06	0.00015	21.5	1.5	1	23	395	418	395	418	0.94
11	13	9.7e-08	1.6e-06	27.7	2.0	1	23	423	446	423	446	0.95
12	13	4.6e-07	7.5e-06	25.6	0.2	1	23	451	474	451	474	0.96
13	13	1.1e-05	0.00019	21.2	5.8	1	23	479	502	479	502	0.96

Sequence Information

Coding Sequence: ATGGAATGTAGTGGTTTATTTAACAAGGATATCAgAGTAAAAGAGGAACCCAATGATATGTCgcttattgaaaataattgtaatatggCTGACGAGATACCTGATCTTAAAAACTTCCAACTTTTACcaattttacaagaaaattcaAAACATAACCTTCGAAAATTTAACTTGAATCATAACAGTAAATTTGATGACGATGTGGAAATAGTTGTTGAATGTGAAGACGTCAAGCCAAACTTTAATTCATTAAcatgtattaaaattgaagatgaTTCTCCAAATCTTTTGCGAAATCTAAGAGACAGTGATGTTTATAAAACTCAAAACATAATCAAAACAGAACCCATGGGTGAAGTGAAAAACGAAGTTTTTGGTGAcgatttagaaaaatcaaatttgaattttgatcgtaaacttgtggaaaaaaataaaaaaagaagtaaaaaaaagtttaacaacgaacataacctcaaatcaCATATCGATACAGTGAATAGGATTAATACCCATGCATGCAATATTTGCACAAAGACTTTTAAACAAAAGAGTAATTTGAATACGCACGTTCGATCAGTTCATAATGGTATCACtgttgcatgtgatatttgcgggaaaaaattcacaaaaaagcATAGTCTCAAAGTCCACATCGATATATTGCATAGAGGTGTCAGACAtgtatgtgatatttgcggaaagaaattttcaacgaagttttattttaagtcCCACATTGATGGGGTGCACATGGGTATCACTCATACATGcaatatttgtgaaaaaatattcgcaaATAAGAGTAGTCTTAAAATGCACATTGAAACAAGGCACAAGGGTGTCACACgtgcatgtgatatatgcggcaagacattttcacaaagaagtaatctcaaaactcacatcgaTACAGTGCATAGAGGTTTCGCACTTGTATGtgataaatgtgaaaagacGTTTACGCGGAAGTATGATCTAAATAGCCACGTTCAATCAGTTCATAATGGTATCACTCatacatgtaatatttgcgaaaagaaatgTTCAACGAGGAGGAATCTCAAGGCCCACATTGATGTGGCGCACATGGgtgtcacacatgcatgtgatacttgtggaaagaaattttcaaataaaagtaGTCTCCAAATCCACATCAATACGTTACATAGAGGTGTCACTTACTTGTGTGAGttttgtggaaagaaattttcaacgaagcaCTATCTCAAGGTCCACATTGATGTAGCGCATATGGGTGTCGCACATGCATGtaatatttgcggaaaaaaattttcccaaaaatcTAATTTGAAAACTCACATTGATACGTTACATAGAGGTGTCACATACGTGtgcgatatttgcggaaagaaattttcaacgaaacaGTATCTCAAGGTCCACATTGATGTAGCGCACATGGGTGTcacacatacatgtgataAATGTGGGAAGACTTTTAATCGGAAGTGTCAGCTGAATAGGCACGTTCAATCAGTTCATAATGGAATTACTCACGTGAGTGAAACTTCCAACGAATTGTTATCTCAAGGTTCACGTGGTTAG
Protein Sequence: MECSGLFNKDIRVKEEPNDMSLIENNCNMADEIPDLKNFQLLPILQENSKHNLRKFNLNHNSKFDDDVEIVVECEDVKPNFNSLTCIKIEDDSPNLLRNLRDSDVYKTQNIIKTEPMGEVKNEVFGDDLEKSNLNFDRKLVEKNKKRSKKKFNNEHNLKSHIDTVNRINTHACNICTKTFKQKSNLNTHVRSVHNGITVACDICGKKFTKKHSLKVHIDILHRGVRHVCDICGKKFSTKFYFKSHIDGVHMGITHTCNICEKIFANKSSLKMHIETRHKGVTRACDICGKTFSQRSNLKTHIDTVHRGFALVCDKCEKTFTRKYDLNSHVQSVHNGITHTCNICEKKCSTRRNLKAHIDVAHMGVTHACDTCGKKFSNKSSLQIHINTLHRGVTYLCEFCGKKFSTKHYLKVHIDVAHMGVAHACNICGKKFSQKSNLKTHIDTLHRGVTYVCDICGKKFSTKQYLKVHIDVAHMGVTHTCDKCGKTFNRKCQLNRHVQSVHNGITHVSETSNELLSQGSRG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01484893;
90% Identity: iTF_01484893;
80% Identity: iTF_01484893;