Tpre008066.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:1063102-1065581[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.3 3.2e+02 0.9 0.6 29 40 148 163 142 171 0.74 2 13 0.0058 0.43 10.1 6.5 3 44 158 195 156 195 0.80 3 13 0.15 11 5.6 1.0 17 31 199 213 198 227 0.82 4 13 0.26 19 4.9 1.3 18 29 228 239 214 255 0.81 5 13 0.00059 0.044 13.3 2.9 18 44 256 279 241 279 0.94 6 13 0.00021 0.015 14.8 0.4 19 44 285 307 283 307 0.95 7 13 0.032 2.4 7.7 0.6 17 43 311 334 308 339 0.73 8 13 0.11 8.2 6.0 4.4 18 43 340 362 337 363 0.91 9 13 0.47 35 4.0 1.9 19 43 369 390 366 391 0.82 10 13 0.24 18 4.9 0.4 19 36 397 411 395 419 0.75 11 13 5.6e-05 0.0042 16.6 1.1 19 44 425 447 420 447 0.93 12 13 0.13 9.4 5.9 0.2 18 29 452 463 450 475 0.78 13 13 0.12 9 5.9 3.9 18 44 480 503 477 509 0.84
Sequence Information
- Coding Sequence
- ATGGAATGTAGTGGTTTATTTAACAAGGATATCAgAGTAAAAGAGGAACCCAATGATATGTCgcttattgaaaataattgtaatatggCTGACGAGATACCTGATCTTAAAAACTTCCAACTTTTACcaattttacaagaaaattcaAAACATAACCTTCGAAAATTTAACTTGAATCATAACAGTAAATTTGATGACGATGTGGAAATAGTTGTTGAATGTGAAGACGTCAAGCCAAACTTTAATTCATTAAcatgtattaaaattgaagatgaTTCTCCAAATCTTTTGCGAAATCTAAGAGACAGTGATGTTTATAAAACTCAAAACATAATCAAAACAGAACCCATGGGTGAAGTGAAAAACGAAGTTTTTGGTGAcgatttagaaaaatcaaatttgaattttgatcgtaaacttgtggaaaaaaataaaaaaagaagtaaaaaaaagtttaacaacgaacataacctcaaatcaCATATCGATACAGTGAATAGGATTAATACCCATGCATGCAATATTTGCACAAAGACTTTTAAACAAAAGAGTAATTTGAATACGCACGTTCGATCAGTTCATAATGGTATCACtgttgcatgtgatatttgcgggaaaaaattcacaaaaaagcATAGTCTCAAAGTCCACATCGATATATTGCATAGAGGTGTCAGACAtgtatgtgatatttgcggaaagaaattttcaacgaagttttattttaagtcCCACATTGATGGGGTGCACATGGGTATCACTCATACATGcaatatttgtgaaaaaatattcgcaaATAAGAGTAGTCTTAAAATGCACATTGAAACAAGGCACAAGGGTGTCACACgtgcatgtgatatatgcggcaagacattttcacaaagaagtaatctcaaaactcacatcgaTACAGTGCATAGAGGTTTCGCACTTGTATGtgataaatgtgaaaagacGTTTACGCGGAAGTATGATCTAAATAGCCACGTTCAATCAGTTCATAATGGTATCACTCatacatgtaatatttgcgaaaagaaatgTTCAACGAGGAGGAATCTCAAGGCCCACATTGATGTGGCGCACATGGgtgtcacacatgcatgtgatacttgtggaaagaaattttcaaataaaagtaGTCTCCAAATCCACATCAATACGTTACATAGAGGTGTCACTTACTTGTGTGAGttttgtggaaagaaattttcaacgaagcaCTATCTCAAGGTCCACATTGATGTAGCGCATATGGGTGTCGCACATGCATGtaatatttgcggaaaaaaattttcccaaaaatcTAATTTGAAAACTCACATTGATACGTTACATAGAGGTGTCACATACGTGtgcgatatttgcggaaagaaattttcaacgaaacaGTATCTCAAGGTCCACATTGATGTAGCGCACATGGGTGTcacacatacatgtgataAATGTGGGAAGACTTTTAATCGGAAGTGTCAGCTGAATAGGCACGTTCAATCAGTTCATAATGGAATTACTCACGTGAGTGAAACTTCCAACGAATTGTTATCTCAAGGTTCACGTGGTTAG
- Protein Sequence
- MECSGLFNKDIRVKEEPNDMSLIENNCNMADEIPDLKNFQLLPILQENSKHNLRKFNLNHNSKFDDDVEIVVECEDVKPNFNSLTCIKIEDDSPNLLRNLRDSDVYKTQNIIKTEPMGEVKNEVFGDDLEKSNLNFDRKLVEKNKKRSKKKFNNEHNLKSHIDTVNRINTHACNICTKTFKQKSNLNTHVRSVHNGITVACDICGKKFTKKHSLKVHIDILHRGVRHVCDICGKKFSTKFYFKSHIDGVHMGITHTCNICEKIFANKSSLKMHIETRHKGVTRACDICGKTFSQRSNLKTHIDTVHRGFALVCDKCEKTFTRKYDLNSHVQSVHNGITHTCNICEKKCSTRRNLKAHIDVAHMGVTHACDTCGKKFSNKSSLQIHINTLHRGVTYLCEFCGKKFSTKHYLKVHIDVAHMGVAHACNICGKKFSQKSNLKTHIDTLHRGVTYVCDICGKKFSTKQYLKVHIDVAHMGVTHTCDKCGKTFNRKCQLNRHVQSVHNGITHVSETSNELLSQGSRG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485104;
- 90% Identity
- iTF_01485104;
- 80% Identity
- iTF_01485104;