Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: -
Assembly: GCA_000599845.3
Location: NW:657761-660159[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 1.4 23 5.2 0.2 8 21 150 163 149 164 0.90

2 16 0.73 12 6.1 1.3 11 23 180 193 171 193 0.90

3 16 1.1e-05 0.00018 21.3 0.7 1 23 198 221 198 221 0.97

4 16 0.00014 0.0023 17.8 0.5 1 23 226 249 226 249 0.91

5 16 0.00035 0.0058 16.5 0.2 2 23 254 276 253 276 0.94

6 16 2.9e-05 0.00047 20.0 0.7 1 23 281 304 281 304 0.94

7 16 1.7e-08 2.8e-07 30.1 0.4 1 23 309 332 309 332 0.98

8 16 7.4e-05 0.0012 18.7 8.3 1 23 337 360 337 360 0.97

9 16 2.4e-07 3.9e-06 26.5 2.7 1 23 365 388 365 388 0.96

10 16 1.9e-06 3.2e-05 23.6 0.7 2 23 394 416 393 416 0.93

11 16 0.0029 0.047 13.7 0.9 1 23 421 444 421 444 0.93

12 16 2.7e-06 4.4e-05 23.2 1.5 2 23 450 472 450 472 0.95

13 16 1.2e-07 1.9e-06 27.5 0.8 1 23 477 500 477 500 0.96

14 16 5.8e-05 0.00095 19.0 1.7 1 23 505 528 505 528 0.97

15 16 7.9e-06 0.00013 21.7 0.4 2 23 562 584 562 584 0.96

16 16 8e-05 0.0013 18.6 4.0 3 23 591 612 590 612 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	1.4	23	5.2	0.2	8	21	150	163	149	164	0.90
2	16	0.73	12	6.1	1.3	11	23	180	193	171	193	0.90
3	16	1.1e-05	0.00018	21.3	0.7	1	23	198	221	198	221	0.97
4	16	0.00014	0.0023	17.8	0.5	1	23	226	249	226	249	0.91
5	16	0.00035	0.0058	16.5	0.2	2	23	254	276	253	276	0.94
6	16	2.9e-05	0.00047	20.0	0.7	1	23	281	304	281	304	0.94
7	16	1.7e-08	2.8e-07	30.1	0.4	1	23	309	332	309	332	0.98
8	16	7.4e-05	0.0012	18.7	8.3	1	23	337	360	337	360	0.97
9	16	2.4e-07	3.9e-06	26.5	2.7	1	23	365	388	365	388	0.96
10	16	1.9e-06	3.2e-05	23.6	0.7	2	23	394	416	393	416	0.93
11	16	0.0029	0.047	13.7	0.9	1	23	421	444	421	444	0.93
12	16	2.7e-06	4.4e-05	23.2	1.5	2	23	450	472	450	472	0.95
13	16	1.2e-07	1.9e-06	27.5	0.8	1	23	477	500	477	500	0.96
14	16	5.8e-05	0.00095	19.0	1.7	1	23	505	528	505	528	0.97
15	16	7.9e-06	0.00013	21.7	0.4	2	23	562	584	562	584	0.96
16	16	8e-05	0.0013	18.6	4.0	3	23	591	612	590	612	0.95

Sequence Information

Coding Sequence: ATGGAATCCAATCATATGTTTAACTCTGGCatcagAGTTAAAGAGGAACCAAATGATGGGTCGTTTACTGGAAATAATTGGGAAATGACTGACGAAAAACCAGATCTTAAAAACGTTCAACTCTTATCATTTTCGCGAGAGAGTTCGacCTATACCCCTAAAAAGTGTGAAGAAAATCACGAAAGTGAACTCGACGACGAAGTGGAAATAGTTGTTGAATGTGAAGACGTCAAGCCACACATTAATTCAttaacagtaaaaaaaattgattgttccCAAAATCTCTGGCGGAACATGAAAGGCAGAGGTGGTCATAAGACTGAAAACATAATTAAAGTAGAATCCGCAGGAGAAGTGAAACAGGAAATTTTTAGTGACATTTCAGAAGAATCGAATTTCAATTTGGATTGTGAACTTGTTGAGCGAAACACAAGAAGAAAAGTagcaaaaaagtataacaacaaacataacctcaaaacacacaTCGATACAGATAATGTTACATCTCACCCATGTAAAATATGGGAAAAGACTCATAATCGAAAGAGTCATCTAAATAAGCATATTCAATCAGCCCATCAAGGTATCACCTTCTCATGCGATATATGCAGCAAGAAATTTTCTCAAGCAGGTACTTTTAAAGTGCACATCAAATCggtgcataaaaaaatctctcatatatgcgatatatgcggaaaATCATTcactaaaaaaagtattctcaAAATTCATATCGATGCGATGCACAATGAAGATATTTCATGTGGTATTTgtgggaaaaaatatttaaataaaggtaatctcaaaaaacacattgatTCAGTACATAAGCGTATCCgtcatgcatgtgatatttgcggaaacaAATACACAACTAAGAGTgacctcaataaacacatcgattcggtgcacgATAAGATTGAATATAAATGCGATGtatgcggaaagtcattttcacgaaaaattaatctcgAAAGGCACATTGACACGGGGCATAATGGTGCAGTCCATACATGCAAAACATGTGGAAAGACGTTTAAACACAAGTTTACTCTGAATAGACACGTTAAATCAAGGCATGATGGTGTTACACATGCATGCAATACGTGCGGAAAGTCATTCACTCAAAAAAGttatctcaaaactcacatcaatacagtacataatggtgtcaaATGTGCATGTGAcatatgcggaaaaaaatttacaagtaaGGCTAATCTCAgaatccacatcgattcggtgcactTAGGTACCACTCATGCATGTGATttgtgcgaaaagaaattcacaaAGAAGAGTATTCTTAAAGCCCACATCGATATAATGCACAATGATGTCGCACCTACTTGTGATATATGCaggaagaaattttcaacgaaaagcAATCTCAAACAAcatatcgattcggtgcacaacGGTGTCACttatgaatgtgatatttgtggaaagaaattctcaaccAAGAATAATCTCATTAAACACATCGATTCAAAGCACAATAACATCGAATATAAATGCGATATATGCGAAAATTCATTTACTCAAAAATGTAgtctcaaagttcacattgAGTCGGTGCACAACGGTATCACTCATGCATATGATATTTGCTGTAAGAcattcaaacgaaaaaatattatcaaaacccacatcgattcggtgcacaatggtgtcaaacgtgtatgcgataagtgcggaaaaaagttcactaaaaatattaatctcCAAATTCACATAGACACGGTGCACAACGGTGTCACTcgtgcatgtgatatttgtagCAAGACATTCAAACGAAAAGattatcttaaaaaacacaaacATAAAGTGCACAATGATTTCACCCACTGA
Protein Sequence: MESNHMFNSGIRVKEEPNDGSFTGNNWEMTDEKPDLKNVQLLSFSRESSTYTPKKCEENHESELDDEVEIVVECEDVKPHINSLTVKKIDCSQNLWRNMKGRGGHKTENIIKVESAGEVKQEIFSDISEESNFNLDCELVERNTRRKVAKKYNNKHNLKTHIDTDNVTSHPCKIWEKTHNRKSHLNKHIQSAHQGITFSCDICSKKFSQAGTFKVHIKSVHKKISHICDICGKSFTKKSILKIHIDAMHNEDISCGICGKKYLNKGNLKKHIDSVHKRIRHACDICGNKYTTKSDLNKHIDSVHDKIEYKCDVCGKSFSRKINLERHIDTGHNGAVHTCKTCGKTFKHKFTLNRHVKSRHDGVTHACNTCGKSFTQKSYLKTHINTVHNGVKCACDICGKKFTSKANLRIHIDSVHLGTTHACDLCEKKFTKKSILKAHIDIMHNDVAPTCDICRKKFSTKSNLKQHIDSVHNGVTYECDICGKKFSTKNNLIKHIDSKHNNIEYKCDICENSFTQKCSLKVHIESVHNGITHAYDICCKTFKRKNIIKTHIDSVHNGVKRVCDKCGKKFTKNINLQIHIDTVHNGVTRACDICSKTFKRKDYLKKHKHKVHNDFTH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01484929;
90% Identity: iTF_01484929;
80% Identity: iTF_01484929;