Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: -
Assembly: GCA_000599845.3
Location: NW:1245693-1248196[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 3e-05 0.0005 19.9 0.2 3 23 225 246 223 246 0.96

2 16 2.7e-06 4.3e-05 23.2 0.6 1 23 251 274 251 274 0.93

3 16 0.00035 0.0058 16.5 2.5 1 20 279 298 279 300 0.94

4 16 1.8e-06 3e-05 23.7 1.2 1 23 307 330 307 330 0.94

5 16 3.7 60 3.9 0.3 1 14 335 348 335 349 0.81

6 16 1.2e-06 2e-05 24.3 0.6 1 23 354 377 354 377 0.92

7 16 4.2e-06 6.9e-05 22.6 1.5 1 23 382 405 382 405 0.94

8 16 9e-06 0.00015 21.5 1.3 3 23 412 433 410 433 0.97

9 16 2.6e-07 4.3e-06 26.4 0.2 1 23 438 461 438 461 0.96

10 16 6.4e-05 0.001 18.9 1.6 1 23 466 489 466 489 0.94

11 16 0.00016 0.0027 17.6 2.3 1 23 494 517 494 517 0.92

12 16 3.7e-05 0.00061 19.6 5.5 1 23 522 545 522 545 0.96

13 16 4.6e-06 7.6e-05 22.5 0.2 1 23 550 573 550 573 0.91

14 16 0.00016 0.0027 17.6 2.3 1 23 578 601 578 601 0.92

15 16 0.0077 0.13 12.3 2.8 1 23 606 629 606 629 0.95

16 16 6.6e-06 0.00011 22.0 1.3 1 23 634 657 634 657 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	3e-05	0.0005	19.9	0.2	3	23	225	246	223	246	0.96
2	16	2.7e-06	4.3e-05	23.2	0.6	1	23	251	274	251	274	0.93
3	16	0.00035	0.0058	16.5	2.5	1	20	279	298	279	300	0.94
4	16	1.8e-06	3e-05	23.7	1.2	1	23	307	330	307	330	0.94
5	16	3.7	60	3.9	0.3	1	14	335	348	335	349	0.81
6	16	1.2e-06	2e-05	24.3	0.6	1	23	354	377	354	377	0.92
7	16	4.2e-06	6.9e-05	22.6	1.5	1	23	382	405	382	405	0.94
8	16	9e-06	0.00015	21.5	1.3	3	23	412	433	410	433	0.97
9	16	2.6e-07	4.3e-06	26.4	0.2	1	23	438	461	438	461	0.96
10	16	6.4e-05	0.001	18.9	1.6	1	23	466	489	466	489	0.94
11	16	0.00016	0.0027	17.6	2.3	1	23	494	517	494	517	0.92
12	16	3.7e-05	0.00061	19.6	5.5	1	23	522	545	522	545	0.96
13	16	4.6e-06	7.6e-05	22.5	0.2	1	23	550	573	550	573	0.91
14	16	0.00016	0.0027	17.6	2.3	1	23	578	601	578	601	0.92
15	16	0.0077	0.13	12.3	2.8	1	23	606	629	606	629	0.95
16	16	6.6e-06	0.00011	22.0	1.3	1	23	634	657	634	657	0.97

Sequence Information

Coding Sequence: ATGGCATGTAGTGGTTCGTTCAACAGCGATGTCAGGGTGAAGGAGGAGCCTGGCGAAGAGTTGCTCAGAggaaataattatgaaatcaTTGATGAAACATACGATCTTGAAAACTTGAAAGATTTACCACTTCTTccagaaaattcaACCCTCGTGCTTCGAAAATGTGACGcaaatcatgaaaatgaatttgaagACAAAGTGGAAGTAGTCGCTGAATACGAAGAATTTAAGCCCAACATTAAATCATTAACAGTAAACAAAATTGACGATGATTCTCTAAATCACTTGCGGAATGTAAAAGATAGCAATGATGATAAAACTCAAAACACGATTAAAATAGAACCAGCGGAAGAAGTGAAACAGGAATATTTTTGTGACGCTGCAGAACAATTGAATTCAAATCTTGATTGTAAGCTAAATGACGATATGGATATAGTTTTCGAATGTGAAGATGTCAAGCCTAATATGGATTATCcagtaattaaacaaattggCAATGGTTATAAAAACCaaaacgaaattaaaatagaGACCTCGGGAAAAGTGAAACATGAGTTTGTTGGTTACCCTGTAGAAGATTCGAATTTGAATATGGATTGTGAAATTGcccaagaaaataaaaaaagaagaatcacaaaaaagtttaacaacGCACAAACGTCTCTCGCATGtgaaatatgcggaaagaaatattcaaataagGCTAATGTGAATTTGCACATTAAATCATCCCATCGAGGTATTATTCACCCGTGTGATCTATGTGGTAAGACGTATTCGCGAAAAGGTaatctcaaatctcacattagCGCCGTACACAATGGTACCAAGCacacatgtgatatttgcggcaacacattttcacaaaaatgtagtctcaaaacccacatcgataGAATACGTAATTGCACCAAACATACATGTGATGTATGCGGAAAGTCGTTTaaacagaagaaaaatcttgaaattcaCGTCGATTCATTGCATACTGGTATCACATATGCATGTACTATTTGTGGAAGGAAACACTCAAGGAAGAGTATGTGTAAAATCGCTTACACATGCGATACATGCGGTAAATCatttactcaaaaaaatagtctcaaaacccacatcgtTGGAATACATAATTGTACCAAACATACATGTGATGtatgcggaaagtcatttaaaaataagagaaGTCTTAAAATTCAcgtcgattcggtgcatattGGTGTCACATATGGATGTGCTATTTGTGGAAGACACTTTTCAAGTAAGCATTATCTCGCAGCTCACATCCGTACGGTGCACAATGGCATCAAATacacatgtgatatttgtggcaAGACACTTTCACAAAAATCCAATCTCAAAGCCCACATTGATTCTGTGCACAGTGGCACCAAACATGCATGTGTTATTTGTGGGAGACAATTTTCAAGAAAGCATTATCTTGAATCTCATATCGGTACAGTGCACAATGGTAATAAACacacatgtgatatttgtggtAAGACATTTTCATGCAAAAGTACTCTTAAAGTCCACATTgatgcagtacataatggtaccagacatacatgtgatatttgtggaagACACTTTTCAACTAAGCATTATCTCAAAACTCATATCGGTACGGTGCACAATGGCACCATGCATGCATGTGACAtatgcggcaagacattttcaatGAAAGGTAACCTTAAAGTCCACATTGATGCAGTGCATAATGATACCAAACacacatgtgatatttgtggtAAGACATTTTCATGCAAAAGTACTCTTAAAGTCCACATTgatgcagtacataatggtacCAGACATACATGTGTTATTTGTGGAAGACAATTTTCAAGTAAGCAGTATCTCGAATGTCACATCGATACGGTGCACAATGGTAACAAACATACATGTGATGTATGCGGAAAGACATATTCACTGAAAGGTAATCTTAACAAACACGTCAAATCAGTGCACAATTAA
Protein Sequence: MACSGSFNSDVRVKEEPGEELLRGNNYEIIDETYDLENLKDLPLLPENSTLVLRKCDANHENEFEDKVEVVAEYEEFKPNIKSLTVNKIDDDSLNHLRNVKDSNDDKTQNTIKIEPAEEVKQEYFCDAAEQLNSNLDCKLNDDMDIVFECEDVKPNMDYPVIKQIGNGYKNQNEIKIETSGKVKHEFVGYPVEDSNLNMDCEIAQENKKRRITKKFNNAQTSLACEICGKKYSNKANVNLHIKSSHRGIIHPCDLCGKTYSRKGNLKSHISAVHNGTKHTCDICGNTFSQKCSLKTHIDRIRNCTKHTCDVCGKSFKQKKNLEIHVDSLHTGITYACTICGRKHSRKSMCKIAYTCDTCGKSFTQKNSLKTHIVGIHNCTKHTCDVCGKSFKNKRSLKIHVDSVHIGVTYGCAICGRHFSSKHYLAAHIRTVHNGIKYTCDICGKTLSQKSNLKAHIDSVHSGTKHACVICGRQFSRKHYLESHIGTVHNGNKHTCDICGKTFSCKSTLKVHIDAVHNGTRHTCDICGRHFSTKHYLKTHIGTVHNGTMHACDICGKTFSMKGNLKVHIDAVHNDTKHTCDICGKTFSCKSTLKVHIDAVHNGTRHTCVICGRQFSSKQYLECHIDTVHNGNKHTCDVCGKTYSLKGNLNKHVKSVHN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01484951;
90% Identity: iTF_01484951;
80% Identity: iTF_01484951;