Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: -
Assembly: GCA_000599845.3
Location: NW:38575-40960[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0028 0.045 13.7 0.8 2 23 184 206 183 206 0.96

2 15 0.0012 0.019 14.9 0.2 1 23 211 234 211 234 0.93

3 15 3e-07 4.9e-06 26.2 0.2 1 23 240 263 240 263 0.96

4 15 0.00012 0.002 18.0 0.3 1 23 268 291 268 291 0.96

5 15 1.8e-05 0.00029 20.6 1.9 1 23 297 320 297 320 0.95

6 15 9.3e-07 1.5e-05 24.6 0.1 1 23 325 348 325 348 0.95

7 15 1.5e-07 2.4e-06 27.2 0.6 1 23 354 377 354 377 0.95

8 15 6e-08 9.7e-07 28.4 0.4 1 23 382 405 382 405 0.97

9 15 0.00061 0.0099 15.8 0.4 1 23 410 433 410 433 0.89

10 15 0.032 0.53 10.4 0.0 5 23 443 462 442 462 0.93

11 15 7.2e-06 0.00012 21.9 0.4 1 23 467 490 467 490 0.96

12 15 0.00073 0.012 15.5 0.1 1 23 495 518 495 518 0.98

13 15 0.00011 0.0018 18.1 1.9 1 23 523 546 523 546 0.95

14 15 0.0084 0.14 12.2 0.4 1 23 551 574 551 574 0.93

15 15 1.2e-07 2e-06 27.4 1.5 1 23 579 602 579 602 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0028	0.045	13.7	0.8	2	23	184	206	183	206	0.96
2	15	0.0012	0.019	14.9	0.2	1	23	211	234	211	234	0.93
3	15	3e-07	4.9e-06	26.2	0.2	1	23	240	263	240	263	0.96
4	15	0.00012	0.002	18.0	0.3	1	23	268	291	268	291	0.96
5	15	1.8e-05	0.00029	20.6	1.9	1	23	297	320	297	320	0.95
6	15	9.3e-07	1.5e-05	24.6	0.1	1	23	325	348	325	348	0.95
7	15	1.5e-07	2.4e-06	27.2	0.6	1	23	354	377	354	377	0.95
8	15	6e-08	9.7e-07	28.4	0.4	1	23	382	405	382	405	0.97
9	15	0.00061	0.0099	15.8	0.4	1	23	410	433	410	433	0.89
10	15	0.032	0.53	10.4	0.0	5	23	443	462	442	462	0.93
11	15	7.2e-06	0.00012	21.9	0.4	1	23	467	490	467	490	0.96
12	15	0.00073	0.012	15.5	0.1	1	23	495	518	495	518	0.98
13	15	0.00011	0.0018	18.1	1.9	1	23	523	546	523	546	0.95
14	15	0.0084	0.14	12.2	0.4	1	23	551	574	551	574	0.93
15	15	1.2e-07	2e-06	27.4	1.5	1	23	579	602	579	602	0.96

Sequence Information

Coding Sequence: atggaGTCTAGTGGTCCAGTCAACTATTCCGACAAaataaaaGAAGAACCTAATGATATGGGTTATGTCACAAATGATAAGGAGCAAACAATAAACCAAGAATCTGATTCTTCAAATATGCAATATCACAGATGTCTGCAAGAGAATATCATTCATACGCTCGAAGAACGCAGAGAAATGAATGATTTTCAATCTAACCAAGAAACTAAAATAGagtttgagtgcaaagatgaaAAATCCGATGTAAATTTATTAGTATCCGCTGAAGCGAGCGAAGgaattcatgaatttcaacctaaccaagaaattaaaatagagtttgagtgcaaagatgtgaAACCAGCTGTGAATTTATTAGTACCCAATAAAGTGAACGATTGGTCGAACGATTTTGCTACTCATTCctcaattaaaatagaaactgAAGGCACAGTCAAGAAAGAGTTTCTCAgcgatattataaaaagtatagatTTCAATACTGGAAGCGAACTCCATGGAAAGGATACCAAAATTAGTCCTCAAATAGAGAAACCCCAAAAATCTAATCAATGTgagaaatgtttaaaaaatttttctgcaaaaaacAGTTTGAAAACCCACATTGATATGGTGCATAAACGTATCACTTATCCGTGTGACatttgtgaaaagacatttaaAAGTCAACTCTATATCAAGTTGCATATTGATTTAGTGCATAAAGGTCGAAAATCTTACAGCTGCGATGTATGCGAAAAGTCATTTGTACAAAAGAGTAATTTGAAAGCCCACATTGATATGGTGCATAAACGTATCACTTACCCGTGTGGCATTtgtgaaaaaacatttaaaatcaaaaattatctGAAGTCACAtattgattcagtgcataatggtcGAAAATCTCACAGCTGCGATAcatgcggaaagtcatttgcacaaaaaagtGCTTTTAAATTACACATTGATTCTAAGCATAATCGTATCAATTACCCATGTGGCATTTGTGGAAAaacatttgtaaataaagGTAATCTCAAAGTGCATACGGATTCAGTGCATGATAATCGAAAACCTCACAGCTGCGATGtatgcggaaagtcatttgcacaaaaaagtaatctgaAAAATCACATTGATGTGGTGCATAATTGTATTGCTTACCCGTGTGACATTTGCGGGAAGTCATTTACACTAAAGAGTAATCTGAAAACACATATTAATTCGGTACATAAACGTATCTCTTACTCGTGTGACatttgtgaaaagacattttcCTATAAGGGTAGTCTCAAATTTCATATTGATGCAGTGCATAATGGTCGAAAATCTCACAACTACGATTTATGCGggaaatcatttttacaaaaggGTGCTCTGAAAGCTCACATCGATGTGGTGCATAAAAATATCACTTACCCGTGTAACatttgtgaaaagacattttcaaGCAAGAGTTCTATCAAGTCAcatatcgattcggtgcataatgggcGAAAATATcaatgtgatatatgcggaaagtTAATTGCATATAAGAGGGCTTTAAAATCACACATTGATACAGTGCACAATCCGATTTCTTATTCGTGtaaaatttgcgaaaaaatatttaaaaaaaaacgttatctCAAGTCGCACGTTGATTCATTGCATAATGAGCGAAAATATCACTGTGAATTATGCGGaatgtcatttttatacaAGGGTGCTCTGAAAACTCATATTGATTGGATACATAATCATATTTCCTACCCGTGTGACATTTgcggaaaatcattttcaagaaaaatacatttaaaaaaacacatcgattcaactcacaaataa
Protein Sequence: MESSGPVNYSDKIKEEPNDMGYVTNDKEQTINQESDSSNMQYHRCLQENIIHTLEERREMNDFQSNQETKIEFECKDEKSDVNLLVSAEASEGIHEFQPNQEIKIEFECKDVKPAVNLLVPNKVNDWSNDFATHSSIKIETEGTVKKEFLSDIIKSIDFNTGSELHGKDTKISPQIEKPQKSNQCEKCLKNFSAKNSLKTHIDMVHKRITYPCDICEKTFKSQLYIKLHIDLVHKGRKSYSCDVCEKSFVQKSNLKAHIDMVHKRITYPCGICEKTFKIKNYLKSHIDSVHNGRKSHSCDTCGKSFAQKSAFKLHIDSKHNRINYPCGICGKTFVNKGNLKVHTDSVHDNRKPHSCDVCGKSFAQKSNLKNHIDVVHNCIAYPCDICGKSFTLKSNLKTHINSVHKRISYSCDICEKTFSYKGSLKFHIDAVHNGRKSHNYDLCGKSFLQKGALKAHIDVVHKNITYPCNICEKTFSSKSSIKSHIDSVHNGRKYQCDICGKLIAYKRALKSHIDTVHNPISYSCKICEKIFKKKRYLKSHVDSLHNERKYHCELCGMSFLYKGALKTHIDWIHNHISYPCDICGKSFSRKIHLKKHIDSTHK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01484892;
90% Identity: iTF_01484892;
80% Identity: iTF_01484892;